| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| cited4b | 0.280 | tbxta | -0.324 |
| inka1a | 0.240 | cdx4 | -0.290 |
| glulb | 0.223 | eve1 | -0.270 |
| sox3 | 0.217 | wnt11f2 | -0.255 |
| nanog | 0.197 | hes6 | -0.236 |
| blf | 0.192 | apoc1 | -0.223 |
| cxcr4b | 0.188 | wnt5b | -0.210 |
| cxcr4a | 0.185 | sebox | -0.194 |
| zgc:100951 | 0.177 | BX927327.1 | -0.194 |
| zgc:173742 | 0.175 | wu:fb97g03 | -0.179 |
| epcam | 0.175 | tpbga | -0.176 |
| ccna1 | 0.173 | osr1 | -0.173 |
| zgc:64022 | 0.172 | im:7138239 | -0.168 |
| cldnd | 0.168 | tbx16 | -0.168 |
| si:dkey-11o15.10 | 0.167 | p4ha2 | -0.165 |
| mkrn4 | 0.166 | mespab | -0.163 |
| acp5a | 0.165 | ndr2 | -0.162 |
| h1m | 0.163 | ved | -0.161 |
| sec61b | 0.159 | zswim5 | -0.158 |
| si:rp71-45k5.2 | 0.156 | aldh1a2 | -0.156 |
| zgc:113424 | 0.156 | rasgef1ba | -0.152 |
| bzw1b | 0.153 | msgn1 | -0.150 |
| spink2.1 | 0.152 | lhx1a | -0.149 |
| si:ch211-173m16.2 | 0.151 | notum1a | -0.148 |
| thy1 | 0.151 | cyp27c1 | -0.147 |
| pttg1 | 0.150 | lft1 | -0.139 |
| rcor1 | 0.150 | znfl2a | -0.139 |
| dctpp1 | 0.150 | sp5a | -0.137 |
| stk35l | 0.150 | efnb2b | -0.134 |
| atp5mc1 | 0.148 | fgf8a | -0.134 |
| rbm7 | 0.148 | serpinh1b | -0.132 |
| FO834825.1 | 0.148 | NC-002333.4 | -0.132 |
| si:ch73-299h12.2 | 0.145 | rpl27 | -0.130 |
| gapdh | 0.143 | ybx1 | -0.129 |
| npc2 | 0.142 | FP102169.1 | -0.129 |