| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| osr1 | 0.217 | sox3 | -0.191 |
| mespab | 0.214 | id1 | -0.142 |
| wnt11f2 | 0.198 | sox19a | -0.136 |
| FP102169.1 | 0.198 | cxcr4b | -0.112 |
| tbxta | 0.197 | zic2b | -0.107 |
| ndr2 | 0.195 | aldob | -0.090 |
| fgf8a | 0.194 | asb11 | -0.087 |
| lhx1a | 0.191 | foxd5 | -0.087 |
| dkk1b | 0.186 | hmgb2a | -0.083 |
| msgn1 | 0.182 | inka1a | -0.080 |
| BX927327.1 | 0.182 | sb:cb81 | -0.078 |
| gata5 | 0.177 | cited4b | -0.073 |
| aldh1a2 | 0.171 | si:ch1073-80i24.3 | -0.070 |
| lft1 | 0.170 | cxcr4a | -0.070 |
| aplnrb | 0.170 | polr3gla | -0.068 |
| pitx2 | 0.170 | si:dkey-56m19.5 | -0.064 |
| cyp27c1 | 0.170 | mych | -0.061 |
| foxa | 0.170 | si:ch211-152c2.3 | -0.060 |
| sebox | 0.168 | si:ch211-222l21.1 | -0.060 |
| fscn1a | 0.167 | shisa2a | -0.060 |
| wu:fb97g03 | 0.166 | sox2 | -0.059 |
| mespaa | 0.165 | crabp2b | -0.058 |
| sp5a | 0.165 | gpd1b | -0.057 |
| trib3 | 0.162 | dnajb1b | -0.056 |
| gata6 | 0.154 | LOC108190024 | -0.056 |
| zswim5 | 0.154 | anp32b | -0.055 |
| zic2a | 0.151 | pkdccb | -0.055 |
| dusp4 | 0.150 | gata2a | -0.053 |
| p4ha2 | 0.149 | klf2b | -0.052 |
| efnb2a | 0.147 | foxh1 | -0.052 |
| flrt3 | 0.147 | anp32a | -0.052 |
| efnb2b | 0.147 | si:ch211-170d8.2 | -0.051 |
| notum1a | 0.143 | alcamb | -0.051 |
| fgf3 | 0.141 | rgcc | -0.051 |
| snai1a | 0.140 | si:ch73-1a9.3 | -0.051 |