| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| prdm1a | 0.234 | ldhba | -0.116 |
| si:dkey-21o19.2 | 0.233 | pax6a | -0.114 |
| XLOC-014477 | 0.215 | pax6b | -0.104 |
| crx | 0.204 | fzd5 | -0.097 |
| otx5 | 0.192 | vsx2 | -0.096 |
| prdm1b | 0.188 | her12 | -0.094 |
| zgc:109965 | 0.188 | XLOC-003690 | -0.088 |
| six7 | 0.182 | mdh1aa | -0.087 |
| nr2e3 | 0.179 | id1 | -0.086 |
| gngt2a | 0.172 | crip3 | -0.085 |
| neurod1 | 0.170 | her15.1 | -0.084 |
| si:ch73-28h20.1 | 0.169 | her4.1 | -0.080 |
| aplnrb | 0.167 | zgc:56493 | -0.079 |
| dscamb | 0.167 | her4.2 | -0.076 |
| zgc:112294 | 0.163 | si:dkey-16p21.8 | -0.075 |
| btg1 | 0.160 | fabp3 | -0.074 |
| RASSF5 | 0.160 | shmt1 | -0.074 |
| fkbp1ab | 0.158 | ncalda | -0.073 |
| samd7 | 0.157 | gas1b | -0.073 |
| opn6a | 0.155 | crabp2a | -0.073 |
| nr2f1b | 0.154 | phgdh | -0.073 |
| rxrgb | 0.147 | COX7A2 (1 of many) | -0.072 |
| msi1 | 0.145 | tmsb4x | -0.071 |
| rxrga | 0.143 | her2 | -0.071 |
| pde6gb | 0.142 | ptgr1 | -0.070 |
| kif19 | 0.140 | XLOC-003692 | -0.070 |
| tulp1a | 0.138 | zfp36l1a | -0.070 |
| tnc | 0.137 | fabp11a | -0.070 |
| myclb | 0.137 | mcm4 | -0.069 |
| anp32e | 0.137 | notch1b | -0.068 |
| tmx3a | 0.137 | notch3 | -0.067 |
| XLOC-004335 | 0.134 | h2afx1 | -0.067 |
| elovl4b | 0.134 | mcm5 | -0.067 |
| ndrg1b | 0.134 | ranbp1 | -0.066 |
| tmem237b | 0.132 | mcm7 | -0.065 |