| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| lhx1a | 0.378 | sox3 | -0.239 |
| mespab | 0.350 | id1 | -0.181 |
| gata5 | 0.338 | cxcr4b | -0.181 |
| msgn1 | 0.332 | sox19a | -0.173 |
| dkk1b | 0.331 | cited4b | -0.151 |
| gata6 | 0.310 | asb11 | -0.121 |
| efnb2b | 0.306 | zic2b | -0.114 |
| FP102169.1 | 0.301 | shisa2a | -0.106 |
| ism1 | 0.298 | inka1a | -0.105 |
| efnb2a | 0.298 | sb:cb81 | -0.099 |
| foxa | 0.295 | cxcr4a | -0.096 |
| osr1 | 0.293 | foxd5 | -0.093 |
| aplnrb | 0.288 | si:ch1073-80i24.3 | -0.091 |
| zic2a | 0.280 | si:ch211-170d8.2 | -0.090 |
| pitx2 | 0.277 | glulb | -0.082 |
| fscn1a | 0.276 | gpd1b | -0.080 |
| ndr2 | 0.272 | sox2 | -0.080 |
| tbxta | 0.271 | pkdccb | -0.078 |
| kirrel3l | 0.271 | pfkfb4b | -0.077 |
| dusp4 | 0.268 | aldob | -0.075 |
| wnt11f2 | 0.263 | gadd45ga | -0.075 |
| cyp27c1 | 0.254 | mex3b | -0.072 |
| sp5a | 0.252 | mych | -0.070 |
| efna1a | 0.250 | zgc:64022 | -0.069 |
| fgf8a | 0.248 | kazald2 | -0.066 |
| mespaa | 0.245 | alcamb | -0.065 |
| BX927327.1 | 0.244 | hirip3 | -0.065 |
| lft1 | 0.242 | sult6b1 | -0.064 |
| trib3 | 0.240 | foxh1 | -0.064 |
| aldh1a2 | 0.231 | her8a | -0.063 |
| sebox | 0.230 | fkbp7 | -0.062 |
| flrt3 | 0.228 | si:dkey-11o15.10 | -0.060 |
| irx3a | 0.225 | polr3gla | -0.059 |
| wu:fb97g03 | 0.221 | exd2 | -0.059 |
| fgf3 | 0.221 | crabp2b | -0.057 |