| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r | 
| pax2a | 0.589 | XLOC-003690 | -0.176 | 
| lhx1a | 0.429 | her15.1 | -0.161 | 
| slc32a1 | 0.400 | hmgb2a | -0.160 | 
| slc6a5 | 0.380 | id1 | -0.157 | 
| slc30a2 | 0.371 | actb2 | -0.153 | 
| pax2b | 0.348 | cldn5a | -0.142 | 
| lhx5 | 0.325 | XLOC-003689 | -0.142 | 
| klhl14 | 0.318 | msna | -0.140 | 
| cacna2d3 | 0.307 | sox3 | -0.137 | 
| nkx1.2lb | 0.303 | mdka | -0.134 | 
| otpb | 0.301 | btg2 | -0.132 | 
| znf385c | 0.297 | notch3 | -0.131 | 
| sncgb | 0.293 | zgc:56493 | -0.131 | 
| LOC100330246 | 0.291 | tubb4b | -0.129 | 
| XLOC-005615 | 0.284 | XLOC-003692 | -0.123 | 
| si:dkey-234i14.2 | 0.281 | her4.2 | -0.123 | 
| bhlhe22 | 0.280 | tuba8l4 | -0.122 | 
| otpa | 0.277 | si:dkey-151g10.6 | -0.122 | 
| mab21l2 | 0.276 | vamp3 | -0.119 | 
| dmrt3a | 0.271 | sdc4 | -0.118 | 
| cxxc4 | 0.252 | her4.1 | -0.116 | 
| stx1b | 0.244 | rplp1 | -0.116 | 
| nrxn1a | 0.239 | msi1 | -0.116 | 
| nsg2 | 0.238 | COX7A2 (1 of many) | -0.114 | 
| stxbp1a | 0.237 | sparc | -0.114 | 
| nrxn3a | 0.237 | sox19a | -0.113 | 
| cplx2 | 0.230 | sb:cb81 | -0.110 | 
| cbfa2t3 | 0.229 | fosab | -0.110 | 
| chn1 | 0.227 | ccng1 | -0.110 | 
| hoxb9a | 0.227 | gfap | -0.109 | 
| esrrga | 0.225 | cd82a | -0.108 | 
| nrxn3b | 0.224 | her12 | -0.107 | 
| celf4 | 0.224 | rpl7 | -0.107 | 
| rbfox3a | 0.224 | tspan7 | -0.106 | 
| esrrb | 0.218 | selenoh | -0.105 |