| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| crx | 0.581 | pax6a | -0.354 |
| syt5b | 0.444 | pax6b | -0.341 |
| ddah2 | 0.371 | ranbp1 | -0.305 |
| rs1a | 0.370 | si:ch211-222l21.1 | -0.293 |
| si:dkey-21o19.2 | 0.363 | id1 | -0.273 |
| neurod1 | 0.358 | her15.1 | -0.273 |
| si:ch73-28h20.1 | 0.355 | rpl9 | -0.270 |
| gngt2a | 0.348 | celf2 | -0.267 |
| btg1 | 0.348 | rrm1 | -0.261 |
| ckbb | 0.342 | nat8l | -0.256 |
| ndrg1b | 0.342 | banf1 | -0.252 |
| anp32e | 0.342 | anp32b | -0.252 |
| tulp1a | 0.330 | setb | -0.251 |
| zgc:109965 | 0.325 | zgc:56493 | -0.250 |
| atp2b1b | 0.318 | pcna | -0.250 |
| prdm1a | 0.316 | sox2 | -0.249 |
| stxbp1b | 0.313 | tubb2b | -0.248 |
| gnb3a | 0.313 | mcm7 | -0.244 |
| sypb | 0.309 | XLOC-003690 | -0.239 |
| ppdpfa | 0.307 | tspan7 | -0.235 |
| fkbp1ab | 0.301 | tuba8l | -0.234 |
| nr2e3 | 0.301 | nasp | -0.229 |
| samsn1a | 0.297 | msna | -0.228 |
| pde6gb | 0.297 | hes6 | -0.227 |
| elovl4b | 0.296 | mdka | -0.227 |
| opn6a | 0.293 | hes2.2 | -0.224 |
| rxrgb | 0.293 | tuba8l4 | -0.222 |
| samd7 | 0.292 | sub1a | -0.221 |
| mpp6b | 0.292 | cbx3a | -0.221 |
| daam1a | 0.287 | lig1 | -0.221 |
| XLOC-014477 | 0.286 | fzd5 | -0.220 |
| zgc:112294 | 0.282 | sox3 | -0.218 |
| tmx3a | 0.282 | cdca7b | -0.218 |
| arl3l1 | 0.278 | akap12b | -0.218 |
| rdh8a | 0.278 | seta | -0.217 |