| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nkx2.2b | 0.361 | mdkb | -0.181 |
| ntn1b | 0.355 | pax3a | -0.175 |
| sulf2b | 0.317 | stmn1b | -0.156 |
| nkx2.9 | 0.286 | gpm6ab | -0.152 |
| foxa | 0.280 | draxin | -0.142 |
| spon1b | 0.268 | msx1b | -0.137 |
| lrrn1 | 0.264 | zic2a | -0.136 |
| si:ch73-265d7.2 | 0.261 | gas1a | -0.136 |
| ptch2 | 0.257 | stxbp1a | -0.132 |
| foxa2 | 0.253 | gng3 | -0.131 |
| notch3 | 0.249 | vamp2 | -0.129 |
| metrnla | 0.248 | sncb | -0.127 |
| cldn5a | 0.247 | atp5if1b | -0.126 |
| XLOC-003689 | 0.245 | lhx1a | -0.125 |
| sdc4 | 0.244 | prss35 | -0.125 |
| shha | 0.238 | snap25a | -0.124 |
| col11a1a | 0.234 | elavl4 | -0.122 |
| nrarpb | 0.231 | stx1b | -0.120 |
| nkx2.2a | 0.227 | mab21l2 | -0.119 |
| her15.1 | 0.211 | zic1 | -0.119 |
| XLOC-003690 | 0.211 | zic5 | -0.118 |
| sulf1 | 0.211 | nrxn1a | -0.117 |
| stox1 | 0.205 | atp6v0cb | -0.117 |
| fzd8a | 0.199 | csdc2a | -0.114 |
| sb:cb81 | 0.199 | zic3 | -0.114 |
| nkx6.2 | 0.192 | rnasekb | -0.111 |
| si:ch73-21g5.7 | 0.190 | map1aa | -0.111 |
| sparcl1 | 0.188 | ywhag2 | -0.111 |
| foxp4 | 0.187 | rtn1b | -0.111 |
| nr2f6b | 0.184 | zic2b | -0.110 |
| sox19a | 0.183 | atp6v1e1b | -0.110 |
| zgc:55461 | 0.181 | slc32a1 | -0.109 |
| nkx6.1 | 0.181 | calm1a | -0.109 |
| cxadr | 0.180 | ppdpfb | -0.109 |
| metrn | 0.178 | fez1 | -0.109 |