| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nkx6.2 | 0.218 | mdkb | -0.066 |
| si:ch211-152f23.5 | 0.205 | pax3a | -0.060 |
| ntn1a | 0.142 | lhx9 | -0.055 |
| vsx2 | 0.132 | zic1 | -0.052 |
| sulf2b | 0.117 | zic2a | -0.050 |
| lhx4 | 0.111 | mir181b-3 | -0.048 |
| pax8 | 0.111 | pax7a | -0.047 |
| prdm8 | 0.109 | tfap2a | -0.047 |
| rnf220a | 0.098 | kirrel3l | -0.047 |
| ptch2 | 0.093 | lhx2b | -0.046 |
| sp8b | 0.090 | barhl2 | -0.046 |
| lbx2 | 0.089 | gas1a | -0.046 |
| neurog1 | 0.088 | msx1b | -0.044 |
| sulf2a | 0.087 | tcf7l2 | -0.042 |
| epha2a | 0.087 | mdka | -0.042 |
| si:ch211-57n23.4 | 0.087 | bcam | -0.042 |
| myclb | 0.086 | boc | -0.041 |
| si:ch73-265d7.2 | 0.084 | lef1 | -0.040 |
| LHX3 | 0.082 | pax7b | -0.040 |
| mpz | 0.078 | tenm3 | -0.039 |
| nr2f6b | 0.077 | id2a | -0.039 |
| nkx2.9 | 0.076 | zic5 | -0.039 |
| meis2b | 0.076 | foxg1a | -0.037 |
| sfrp5 | 0.075 | zic4 | -0.037 |
| nkx6.3 | 0.074 | zic3 | -0.036 |
| lin28a | 0.073 | tfap2b | -0.036 |
| sb:cb81 | 0.072 | apoc1 | -0.035 |
| neurod4 | 0.072 | myca | -0.035 |
| trim71 | 0.070 | tfap2e | -0.034 |
| dlb | 0.070 | otpa | -0.034 |
| ebf2 | 0.069 | dbx1a | -0.034 |
| notch1a | 0.068 | apoeb | -0.034 |
| vsx1 | 0.066 | roraa | -0.034 |
| CABZ01075068.1 | 0.066 | sox5 | -0.033 |
| gfap | 0.065 | emx2 | -0.033 |