| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| gdf10a | 0.202 | tuba8l3 | -0.068 |
| zic1 | 0.188 | onecut1 | -0.060 |
| msx3 | 0.163 | elavl3 | -0.059 |
| zic2a | 0.158 | jagn1a | -0.059 |
| zic5 | 0.154 | ptmaa | -0.059 |
| prss35 | 0.148 | nhlh2 | -0.056 |
| fzd10 | 0.143 | scrt2 | -0.055 |
| zic4 | 0.140 | myt1b | -0.055 |
| msx1b | 0.139 | thsd7aa | -0.055 |
| ptprfb | 0.137 | insm1a | -0.052 |
| boc | 0.136 | stap2a | -0.051 |
| wls | 0.136 | isl2a | -0.051 |
| zic3 | 0.134 | isl2b | -0.050 |
| adamtsl5 | 0.134 | onecut2 | -0.050 |
| sema3gb | 0.133 | zwi | -0.050 |
| akap12b | 0.131 | LOC100537384 | -0.049 |
| gas1a | 0.129 | si:dkey-280e21.3 | -0.049 |
| mdkb | 0.128 | pax2a | -0.048 |
| mdka | 0.122 | gng3 | -0.048 |
| crabp2a | 0.122 | isl1 | -0.047 |
| sox2 | 0.121 | cldnk | -0.047 |
| pdgfaa | 0.119 | timd4 | -0.047 |
| zic2b | 0.119 | gng2 | -0.047 |
| cdon | 0.118 | epb41a | -0.046 |
| olig3 | 0.117 | ebf2 | -0.046 |
| pax3a | 0.115 | scrt1a | -0.046 |
| tnc | 0.115 | nsg2 | -0.045 |
| cdh6 | 0.115 | vamp2 | -0.045 |
| col12a1a | 0.113 | pax2b | -0.045 |
| cldn5a | 0.110 | si:ch211-247j9.1 | -0.044 |
| masp1 | 0.110 | mbpa | -0.044 |
| notch3 | 0.109 | cdhr5a | -0.044 |
| id1 | 0.107 | zgc:112994 | -0.044 |
| rfx4 | 0.107 | atcaya | -0.044 |
| si:dkey-34d22.1 | 0.104 | mbpb | -0.044 |