Gene expression UMAP
Other cell groups
all cells |
blastomeres |
PGCs |
endoderm |
axial mesoderm |
muscle  |
mural cells / non-skeletal muscle  |
mesenchyme  |
hematopoietic / vasculature  |
pronephros  |
neural |
spinal cord / glia |
eye |
taste / olfactory |
otic / lateral line |
epidermis |
periderm |
fin |
ionocytes / mucous |
pigment cells |
Expression by stage/cluster
Correlated gene expression
| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| pitx3 | 0.586 | ptmab | -0.179 |
| foxe3 | 0.562 | ptmaa | -0.169 |
| tgfb3 | 0.484 | hmgn6 | -0.135 |
| fgfrl1b | 0.481 | ckbb | -0.129 |
| CR356246.1 | 0.468 | hmgb1a | -0.125 |
| mgarp | 0.468 | tuba1c | -0.123 |
| slc7a11 | 0.465 | fabp7a | -0.116 |
| gja8b | 0.448 | tmsb4x | -0.114 |
| rbm24a | 0.442 | gpm6aa | -0.113 |
| sparcl1 | 0.434 | si:ch211-137a8.4 | -0.105 |
| lim2.1 | 0.412 | gpm6ab | -0.104 |
| prox2 | 0.410 | tuba1a | -0.102 |
| cps1 | 0.408 | h2afva | -0.101 |
| col28a1a | 0.397 | cadm3 | -0.097 |
| spon1b | 0.397 | marcksl1b | -0.097 |
| vcana | 0.390 | si:ch73-1a9.3 | -0.093 |
| igfbp2a | 0.382 | nova2 | -0.092 |
| s100a10b | 0.367 | mdkb | -0.088 |
| fabp11a | 0.362 | anp32e | -0.087 |
| scinla | 0.362 | epb41a | -0.079 |
| col28a1b | 0.361 | rorb | -0.078 |
| FO681288.1 | 0.358 | snap25b | -0.075 |
| s1pr3a | 0.348 | marcksb | -0.074 |
| otc | 0.345 | atp6v0cb | -0.074 |
| crybb1 | 0.340 | jpt1b | -0.073 |
| col4a4 | 0.330 | CR383676.1 | -0.073 |
| slc3a2a | 0.320 | hmgb1b | -0.073 |
| zgc:55262 | 0.316 | cspg5a | -0.072 |
| si:ch211-219a15.3 | 0.313 | rnasekb | -0.072 |
| ace | 0.303 | rtn1a | -0.071 |
| mafba | 0.300 | hnrnpa0a | -0.071 |
| endouc | 0.299 | stmn1b | -0.071 |
| bmp5 | 0.292 | foxg1b | -0.071 |
| sox1b | 0.292 | h3f3c | -0.071 |
| col4a3 | 0.287 | fabp3 | -0.070 |