Gene expression UMAP
Other cell groups
all cells |
blastomeres |
PGCs |
endoderm |
axial mesoderm |
muscle  |
mural cells / non-skeletal muscle  |
mesenchyme  |
hematopoietic / vasculature  |
pronephros  |
neural |
spinal cord / glia |
eye |
taste / olfactory |
otic / lateral line |
epidermis |
periderm |
fin |
ionocytes / mucous |
pigment cells |
Expression by stage/cluster
Correlated gene expression
| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| slc18a3a | 0.386 | XLOC-003690 | -0.165 |
| mnx1 | 0.338 | id1 | -0.164 |
| tac1 | 0.328 | mdka | -0.153 |
| slc5a7a | 0.310 | her15.1 | -0.142 |
| si:ch211-247j9.1 | 0.305 | cldn5a | -0.134 |
| isl2a | 0.299 | sox3 | -0.134 |
| lhx4 | 0.296 | btg2 | -0.131 |
| ache | 0.277 | notch3 | -0.131 |
| islr2 | 0.264 | hmgb2a | -0.127 |
| mnx2b | 0.260 | XLOC-003689 | -0.126 |
| chga | 0.259 | sparc | -0.124 |
| chata | 0.256 | vamp3 | -0.122 |
| cplx2l | 0.254 | sdc4 | -0.121 |
| isl1 | 0.249 | tspan7 | -0.118 |
| cntn2 | 0.248 | msi1 | -0.117 |
| chodl | 0.245 | COX7A2 (1 of many) | -0.116 |
| onecut1 | 0.244 | her4.2 | -0.114 |
| elavl4 | 0.240 | msna | -0.112 |
| slit3 | 0.239 | her4.1 | -0.110 |
| cplx2 | 0.234 | XLOC-003692 | -0.109 |
| gap43 | 0.233 | zgc:56493 | -0.109 |
| rbfox1 | 0.230 | sox19a | -0.107 |
| si:dkey-85n7.6 | 0.230 | gpm6bb | -0.106 |
| mnx2a | 0.230 | her12 | -0.106 |
| syt2a | 0.229 | cd82a | -0.105 |
| isl2b | 0.228 | si:dkey-151g10.6 | -0.103 |
| SLC35D3 | 0.228 | sb:cb81 | -0.103 |
| sv2c | 0.228 | sox2 | -0.102 |
| stmn2a | 0.227 | si:ch73-281n10.2 | -0.101 |
| onecut3a | 0.223 | fosab | -0.100 |
| pcsk1nl | 0.221 | fabp7a | -0.099 |
| gng3 | 0.221 | si:ch211-286b5.5 | -0.099 |
| xpr1a | 0.220 | atp1a1b | -0.099 |
| stmn2b | 0.218 | zgc:165461 | -0.097 |
| rtn1b | 0.217 | rplp1 | -0.097 |