| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hmx2 | 0.636 | id1 | -0.181 |
| lhx1a | 0.389 | XLOC-003690 | -0.179 |
| foxd3 | 0.368 | mdka | -0.160 |
| lhx5 | 0.338 | her15.1 | -0.158 |
| pou4f1 | 0.331 | cldn5a | -0.157 |
| tfap2a | 0.308 | msna | -0.147 |
| rbfox3a | 0.278 | sox3 | -0.144 |
| stxbp1a | 0.277 | hmgb2a | -0.143 |
| en1b | 0.276 | notch3 | -0.143 |
| nrxn1a | 0.260 | XLOC-003689 | -0.138 |
| stx1b | 0.257 | sparc | -0.137 |
| pou4f2 | 0.250 | vamp3 | -0.134 |
| sncb | 0.246 | sdc4 | -0.133 |
| zfhx3 | 0.234 | msi1 | -0.130 |
| snap25a | 0.232 | btg2 | -0.126 |
| ube2ql1 | 0.231 | COX7A2 (1 of many) | -0.124 |
| vamp2 | 0.228 | her4.1 | -0.121 |
| csdc2a | 0.225 | sox19a | -0.121 |
| sncgb | 0.224 | fosab | -0.120 |
| cbfa2t3 | 0.221 | her4.2 | -0.120 |
| celf5a | 0.221 | fabp7a | -0.119 |
| gng3 | 0.216 | XLOC-003692 | -0.118 |
| pou2f2a | 0.214 | si:ch73-281n10.2 | -0.118 |
| atcaya | 0.213 | cd82a | -0.117 |
| cplx2l | 0.209 | her12 | -0.117 |
| celf4 | 0.208 | zgc:56493 | -0.114 |
| elavl3 | 0.207 | gpm6bb | -0.114 |
| syt2a | 0.207 | actb2 | -0.114 |
| stmn1b | 0.207 | sb:cb81 | -0.112 |
| ywhag2 | 0.207 | gfap | -0.112 |
| gng2 | 0.204 | si:ch211-286b5.5 | -0.111 |
| nrn1a | 0.204 | atp1a1b | -0.111 |
| uncx | 0.203 | tuba8l | -0.110 |
| atp6v0cb | 0.202 | tuba8l4 | -0.109 |
| slc6a5 | 0.199 | ccng1 | -0.107 |