| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| chrd | 0.270 | sox3 | -0.187 |
| foxa3 | 0.256 | aldob | -0.187 |
| foxa | 0.239 | polr3gla | -0.174 |
| fgf17 | 0.210 | si:ch73-1a9.3 | -0.172 |
| foxa2 | 0.208 | id1 | -0.171 |
| lhx1a | 0.208 | si:dkey-56m19.5 | -0.161 |
| cth1 | 0.207 | si:ch211-222l21.1 | -0.160 |
| frmd4ba | 0.189 | ved | -0.157 |
| fgf3 | 0.186 | si:ch1073-80i24.3 | -0.152 |
| pitx2 | 0.186 | si:ch211-152c2.3 | -0.151 |
| dkk1b | 0.186 | marcksl1b | -0.149 |
| dusp4 | 0.184 | sox19a | -0.148 |
| tph1b | 0.174 | asb11 | -0.147 |
| lft2 | 0.174 | apoeb | -0.146 |
| xbp1 | 0.172 | hmgb2a | -0.143 |
| fzd8b | 0.170 | hnrnpa0b | -0.140 |
| ism1 | 0.163 | anp32e | -0.139 |
| trib3 | 0.161 | atp1b1a | -0.136 |
| efna1a | 0.161 | dynll1 | -0.128 |
| irx3a | 0.160 | hmga1a | -0.127 |
| efnb2b | 0.159 | eef1a1l1 | -0.126 |
| fgf8a | 0.159 | anp32b | -0.124 |
| gata5 | 0.157 | rplp1 | -0.120 |
| fscn1a | 0.155 | si:dkey-151g10.6 | -0.115 |
| ripply1 | 0.151 | hmgn6 | -0.113 |
| dharma | 0.148 | add3b | -0.110 |
| gata6 | 0.144 | hspb1 | -0.110 |
| sox32 | 0.142 | vox | -0.109 |
| kirrel3l | 0.138 | hnrnpa1b | -0.108 |
| nog1 | 0.136 | zic2b | -0.106 |
| osr1 | 0.134 | ptmab | -0.105 |
| LOC110438407 | 0.134 | rpsa | -0.105 |
| ndr1 | 0.132 | stm | -0.105 |
| aplnra | 0.131 | rps12 | -0.103 |
| lft1 | 0.130 | mych | -0.101 |