| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| cdx4 | 0.278 | sox3 | -0.125 |
| tbxta | 0.246 | cited4b | -0.121 |
| eve1 | 0.241 | shisa2a | -0.119 |
| wnt11f2 | 0.220 | inka1a | -0.112 |
| hes6 | 0.185 | si:ch211-173m16.2 | -0.106 |
| tpbga | 0.173 | nanog | -0.092 |
| msx1b | 0.170 | epcam | -0.076 |
| BX927327.1 | 0.160 | glulb | -0.076 |
| wu:fb97g03 | 0.151 | h1m | -0.074 |
| znf703 | 0.142 | zgc:64022 | -0.073 |
| rasgef1ba | 0.140 | cldnd | -0.071 |
| wnt5b | 0.138 | rbm7 | -0.071 |
| sebox | 0.137 | zgc:100951 | -0.071 |
| cdx1a | 0.136 | zgc:173742 | -0.069 |
| ism2a | 0.133 | mkrn4 | -0.066 |
| dld | 0.130 | foxh1 | -0.065 |
| im:7138239 | 0.128 | ccna1 | -0.065 |
| nradd | 0.122 | npc2 | -0.064 |
| ved | 0.121 | mia3 | -0.063 |
| BX908750.2 | 0.119 | blf | -0.062 |
| lmo4a | 0.119 | thy1 | -0.062 |
| sp5a | 0.119 | uacab | -0.062 |
| znfl2a | 0.114 | LOC101885477 | -0.062 |
| axin2 | 0.114 | exd2 | -0.062 |
| ybx1 | 0.109 | asb11 | -0.062 |
| arg2 | 0.109 | si:dkey-11o15.10 | -0.060 |
| BX927258.1 | 0.108 | spink2.1 | -0.059 |
| XLOC-034199 | 0.106 | fdx1 | -0.059 |
| LOC103910957 | 0.104 | zgc:56676 | -0.058 |
| vrtn | 0.103 | gkap1 | -0.058 |
| si:ch73-24k9.2 | 0.103 | rcor1 | -0.058 |
| cyp2aa8 | 0.102 | si:ch211-170d8.2 | -0.058 |
| LOC101885053 | 0.101 | sugt1 | -0.058 |
| htr1ab | 0.099 | sfrp1a | -0.057 |
| LOC108181115 | 0.099 | klf17 | -0.057 |