| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| gata6 | 0.698 | sox3 | -0.376 |
| dkk1b | 0.638 | id1 | -0.374 |
| lhx1a | 0.635 | cxcr4b | -0.313 |
| pitx2 | 0.611 | sox19a | -0.272 |
| msgn1 | 0.607 | asb11 | -0.257 |
| ism1 | 0.605 | cited4b | -0.253 |
| efnb2b | 0.597 | zic2b | -0.243 |
| FP102169.1 | 0.586 | si:ch1073-80i24.3 | -0.207 |
| lft2 | 0.578 | sb:cb81 | -0.207 |
| plekhn1 | 0.549 | foxd5 | -0.196 |
| efnb2a | 0.543 | inka1a | -0.177 |
| mespab | 0.543 | aldob | -0.175 |
| dusp4 | 0.537 | glulb | -0.168 |
| foxa | 0.530 | mych | -0.143 |
| sp5a | 0.529 | mex3b | -0.137 |
| kirrel3l | 0.521 | pfkfb4b | -0.135 |
| efna1a | 0.516 | foxh1 | -0.126 |
| sox32 | 0.515 | cxcr4a | -0.123 |
| osr1 | 0.485 | shisa2a | -0.119 |
| zic2a | 0.483 | foxd3 | -0.117 |
| mespaa | 0.479 | gpd1b | -0.114 |
| aplnrb | 0.475 | stmn1a | -0.113 |
| rnd1b | 0.469 | nnr | -0.112 |
| trib3 | 0.458 | sox2 | -0.111 |
| frmd4ba | 0.434 | si:ch211-173m16.2 | -0.110 |
| elovl6 | 0.422 | hmgb2a | -0.109 |
| flrt3 | 0.419 | blf | -0.108 |
| krt99 | 0.419 | si:dkey-56m19.5 | -0.105 |
| fgf3 | 0.412 | apela | -0.105 |
| CR847953.1 | 0.404 | atp1b1a | -0.100 |
| snai1a | 0.403 | cdca7a | -0.099 |
| fscn1a | 0.402 | zgc:100951 | -0.098 |
| fgf8a | 0.398 | hirip3 | -0.098 |
| foxc1a | 0.387 | si:ch211-170d8.2 | -0.098 |
| irx3a | 0.386 | snai2 | -0.097 |