| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hmx3a | 0.368 | sox3 | -0.172 |
| en1b | 0.364 | mdka | -0.167 |
| ednrab | 0.272 | cldn5a | -0.157 |
| hmx2 | 0.256 | XLOC-003689 | -0.149 |
| tfap2a | 0.252 | msi1 | -0.145 |
| snai1b | 0.248 | her15.1 | -0.137 |
| lhx1a | 0.240 | XLOC-003690 | -0.135 |
| gbx2 | 0.237 | sox19a | -0.133 |
| BX248318.1 | 0.222 | notch3 | -0.130 |
| lhx5 | 0.209 | gfap | -0.128 |
| rbfox3a | 0.188 | her4.2 | -0.127 |
| tfec | 0.186 | gpm6bb | -0.125 |
| cbfa2t3 | 0.182 | zgc:165461 | -0.124 |
| slc30a2 | 0.176 | atp1a1b | -0.119 |
| celf5a | 0.172 | her4.1 | -0.119 |
| pax2a | 0.172 | si:ch73-265d7.2 | -0.117 |
| ube2ql1 | 0.171 | id1 | -0.114 |
| scn4ab | 0.171 | atp1b4 | -0.114 |
| gpm6ab | 0.169 | si:ch73-21g5.7 | -0.113 |
| nr4a2b | 0.169 | vim | -0.113 |
| pou4f1 | 0.166 | abhd6a | -0.110 |
| slc6a5 | 0.165 | sox2 | -0.110 |
| pou4f2 | 0.162 | XLOC-003692 | -0.110 |
| mcamb | 0.162 | fabp7a | -0.107 |
| nanos1 | 0.160 | sb:cb81 | -0.107 |
| nxph2a | 0.160 | CU467822.1 | -0.107 |
| zfhx4 | 0.160 | cd82a | -0.106 |
| stxbp1a | 0.157 | nrarpb | -0.105 |
| sncgb | 0.156 | fgfr3 | -0.105 |
| hbegfb | 0.155 | tmem47 | -0.105 |
| calm1a | 0.151 | notch1b | -0.103 |
| zfhx3 | 0.148 | endouc | -0.102 |
| lamb1b | 0.147 | lfng | -0.101 |
| slc32a1 | 0.146 | si:ch211-251b21.1 | -0.100 |
| ppp1r1c | 0.146 | hmgb2a | -0.099 |