| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| lhx1a | 0.363 | sox3 | -0.243 |
| dkk1b | 0.313 | id1 | -0.226 |
| gata5 | 0.298 | cxcr4b | -0.175 |
| msgn1 | 0.285 | sox19a | -0.162 |
| pitx2 | 0.283 | asb11 | -0.137 |
| foxa | 0.282 | zic2b | -0.124 |
| fgf8a | 0.273 | si:ch1073-80i24.3 | -0.123 |
| gata6 | 0.266 | aldob | -0.119 |
| fgf3 | 0.263 | cxcr4a | -0.119 |
| osr1 | 0.263 | mych | -0.117 |
| lft1 | 0.262 | sb:cb81 | -0.112 |
| lft2 | 0.262 | inka1a | -0.110 |
| efnb2b | 0.262 | nnr | -0.105 |
| ism1 | 0.261 | glulb | -0.103 |
| gsc | 0.256 | foxd5 | -0.098 |
| fscn1a | 0.255 | anp32b | -0.097 |
| dusp4 | 0.254 | polr3gla | -0.094 |
| trib3 | 0.252 | sox2 | -0.094 |
| mespab | 0.249 | cdca7a | -0.091 |
| fgf17 | 0.244 | atp1b1a | -0.090 |
| efnb2a | 0.242 | si:dkey-56m19.5 | -0.089 |
| aplnrb | 0.238 | cited4b | -0.084 |
| cyp27c1 | 0.235 | foxh1 | -0.083 |
| irx3a | 0.229 | fkbp7 | -0.079 |
| wnt11f2 | 0.228 | pfkfb4b | -0.078 |
| FP102169.1 | 0.228 | crabp2b | -0.078 |
| flrt3 | 0.224 | hmgb2a | -0.077 |
| chrd | 0.222 | gpd1b | -0.075 |
| elovl6 | 0.220 | stmn1a | -0.075 |
| tbxta | 0.220 | si:ch211-152c2.3 | -0.075 |
| zic2a | 0.215 | LOC108190024 | -0.073 |
| mespaa | 0.214 | apoeb | -0.071 |
| ndr2 | 0.214 | si:ch211-170d8.2 | -0.071 |
| rdh10a | 0.212 | kazald2 | -0.068 |
| efna1a | 0.211 | dnajb1b | -0.067 |