Gene expression UMAP
Other cell groups
all cells |
blastomeres |
PGCs |
endoderm |
axial mesoderm |
muscle  |
mural cells / non-skeletal muscle  |
mesenchyme  |
hematopoietic / vasculature  |
pronephros  |
neural |
spinal cord / glia |
eye |
taste / olfactory |
otic / lateral line |
epidermis |
periderm |
fin |
ionocytes / mucous |
pigment cells |
Expression by stage/cluster
Correlated gene expression
| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| lhx1a | 0.601 | sox3 | -0.425 |
| mespab | 0.595 | id1 | -0.360 |
| gata5 | 0.586 | cxcr4b | -0.316 |
| msgn1 | 0.583 | sox19a | -0.284 |
| dkk1b | 0.579 | asb11 | -0.252 |
| osr1 | 0.551 | zic2b | -0.246 |
| gata6 | 0.533 | cited4b | -0.232 |
| efnb2b | 0.530 | foxd5 | -0.221 |
| pitx2 | 0.512 | si:ch1073-80i24.3 | -0.211 |
| ism1 | 0.500 | sb:cb81 | -0.197 |
| foxa | 0.494 | aldob | -0.187 |
| zic2a | 0.486 | inka1a | -0.171 |
| mespaa | 0.479 | cxcr4a | -0.165 |
| kirrel3l | 0.478 | hmgb2a | -0.148 |
| aplnrb | 0.470 | sox2 | -0.140 |
| sp5a | 0.468 | foxh1 | -0.139 |
| efnb2a | 0.467 | pfkfb4b | -0.134 |
| dusp4 | 0.455 | glulb | -0.133 |
| plekhn1 | 0.446 | shisa2a | -0.129 |
| BX927327.1 | 0.445 | gpd1b | -0.123 |
| ndr2 | 0.442 | foxd3 | -0.120 |
| aldh1a2 | 0.435 | si:ch211-152c2.3 | -0.119 |
| tbxta | 0.423 | mex3b | -0.114 |
| lft2 | 0.421 | alcamb | -0.113 |
| efna1a | 0.417 | si:ch211-170d8.2 | -0.112 |
| trib3 | 0.414 | si:dkey-56m19.5 | -0.111 |
| fgf8a | 0.412 | mych | -0.109 |
| fscn1a | 0.409 | crabp2b | -0.106 |
| wnt11f2 | 0.405 | nnr | -0.102 |
| lft1 | 0.402 | dnajb1b | -0.102 |
| snai1a | 0.395 | atp1b1a | -0.101 |
| flrt3 | 0.394 | her8a | -0.096 |
| cyp27c1 | 0.392 | anp32b | -0.096 |
| fgf3 | 0.383 | polr3gla | -0.096 |
| rnd1b | 0.382 | fkbp7 | -0.095 |