| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| tbxta | 0.258 | sox3 | -0.216 |
| wnt11f2 | 0.244 | sox19a | -0.135 |
| osr1 | 0.224 | cited4b | -0.117 |
| lhx1a | 0.222 | cxcr4b | -0.114 |
| BX927327.1 | 0.211 | id1 | -0.114 |
| sebox | 0.207 | cxcr4a | -0.093 |
| fscn1a | 0.202 | shisa2a | -0.091 |
| ndr2 | 0.200 | zic2b | -0.085 |
| hes6 | 0.194 | gpd1b | -0.079 |
| FP102169.1 | 0.188 | asb11 | -0.078 |
| mespab | 0.187 | LOC108190024 | -0.077 |
| dkk1b | 0.180 | pkdccb | -0.074 |
| fgf8a | 0.178 | sfrp1a | -0.073 |
| wnt5b | 0.172 | hmgb2a | -0.073 |
| cyp27c1 | 0.171 | foxd5 | -0.072 |
| tpbga | 0.166 | sox2 | -0.071 |
| sp5a | 0.164 | si:ch211-170d8.2 | -0.071 |
| notum1a | 0.162 | pfkfb4b | -0.066 |
| eve1 | 0.162 | aldob | -0.066 |
| wu:fb97g03 | 0.159 | inka1a | -0.064 |
| foxa | 0.154 | zgc:64022 | -0.060 |
| p4ha2 | 0.154 | crabp2b | -0.060 |
| pitx2 | 0.154 | si:ch1073-80i24.3 | -0.059 |
| tbx16 | 0.152 | kazald2 | -0.058 |
| ndr1 | 0.152 | mych | -0.057 |
| ddit4 | 0.151 | lfng | -0.057 |
| aplnrb | 0.151 | glulb | -0.055 |
| lft1 | 0.149 | rgcc | -0.055 |
| aldh1a2 | 0.148 | foxh1 | -0.053 |
| zic2a | 0.145 | gata2a | -0.052 |
| flrt3 | 0.144 | nova1 | -0.051 |
| msgn1 | 0.143 | si:ch211-152c2.3 | -0.050 |
| fgf3 | 0.142 | si:ch211-173m16.2 | -0.050 |
| trib3 | 0.142 | gadd45ga | -0.047 |
| rasgef1ba | 0.141 | lhx5 | -0.047 |