| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| sox3 | 0.410 | lhx1a | -0.356 |
| id1 | 0.336 | osr1 | -0.339 |
| cited4b | 0.305 | tbxta | -0.335 |
| zic2b | 0.293 | mespab | -0.335 |
| asb11 | 0.277 | wnt11f2 | -0.331 |
| sox19a | 0.276 | msgn1 | -0.327 |
| inka1a | 0.274 | FP102169.1 | -0.316 |
| cxcr4a | 0.264 | gata5 | -0.313 |
| si:ch1073-80i24.3 | 0.244 | efnb2b | -0.305 |
| foxd5 | 0.229 | dkk1b | -0.304 |
| aldob | 0.217 | BX927327.1 | -0.298 |
| sb:cb81 | 0.205 | pitx2 | -0.294 |
| glulb | 0.197 | gata6 | -0.290 |
| mych | 0.192 | foxa | -0.290 |
| shisa2a | 0.188 | ndr2 | -0.287 |
| gpd1b | 0.174 | fgf8a | -0.287 |
| foxd3 | 0.170 | sp5a | -0.284 |
| nnr | 0.166 | ism1 | -0.279 |
| mex3b | 0.165 | aplnrb | -0.271 |
| foxh1 | 0.164 | lft1 | -0.270 |
| atp1b1a | 0.164 | zic2a | -0.264 |
| ccnd1 | 0.158 | sebox | -0.258 |
| fbxo5 | 0.156 | flrt3 | -0.257 |
| sox11a | 0.156 | cyp27c1 | -0.257 |
| si:ch211-173m16.2 | 0.155 | wu:fb97g03 | -0.255 |
| si:ch211-152c2.3 | 0.154 | kirrel3l | -0.245 |
| pfkfb4b | 0.150 | trib3 | -0.245 |
| cdca7a | 0.148 | dusp4 | -0.243 |
| srsf5a | 0.145 | mespaa | -0.241 |
| mplkip | 0.144 | aldh1a2 | -0.240 |
| cx43.4 | 0.143 | efnb2a | -0.239 |
| dnajb1b | 0.141 | efna1a | -0.235 |
| marcksl1b | 0.139 | fgf3 | -0.231 |
| si:dkey-56m19.5 | 0.138 | ndr1 | -0.229 |
| ddx5 | 0.135 | wnt5b | -0.225 |