| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| eve1 | 0.640 | cited4b | -0.327 |
| tbxta | 0.625 | shisa2a | -0.290 |
| hes6 | 0.513 | inka1a | -0.287 |
| wnt11f2 | 0.490 | sox3 | -0.283 |
| wnt5b | 0.404 | nanog | -0.247 |
| ved | 0.394 | si:ch211-173m16.2 | -0.228 |
| tpbga | 0.392 | stk35l | -0.216 |
| BX927327.1 | 0.377 | blf | -0.213 |
| apoc1 | 0.349 | cxcr4a | -0.205 |
| sebox | 0.340 | h1m | -0.205 |
| wu:fb97g03 | 0.340 | zgc:100951 | -0.196 |
| cdx1a | 0.337 | ccna1 | -0.195 |
| dld | 0.307 | zgc:173742 | -0.195 |
| rasgef1ba | 0.303 | cldnd | -0.193 |
| znfl2a | 0.290 | acp5a | -0.192 |
| ybx1 | 0.290 | mkrn4 | -0.192 |
| tbx16 | 0.288 | spink2.1 | -0.188 |
| p4ha2 | 0.285 | asb11 | -0.188 |
| nradd | 0.278 | epcam | -0.184 |
| gbx1 | 0.278 | zgc:64022 | -0.180 |
| notum1a | 0.278 | pho | -0.179 |
| msx1b | 0.264 | si:dkey-11o15.10 | -0.177 |
| im:7138239 | 0.260 | cxcr4b | -0.176 |
| vrtn | 0.255 | zgc:113424 | -0.176 |
| znf703 | 0.250 | glulb | -0.174 |
| bmp4 | 0.248 | rbm7 | -0.174 |
| ndr2 | 0.239 | si:ch73-299h12.2 | -0.173 |
| si:dkeyp-2e4.3 | 0.239 | si:dkey-68o6.5 | -0.171 |
| atp1b3a | 0.228 | h2af1al | -0.168 |
| osr1 | 0.225 | thy1 | -0.167 |
| mespab | 0.224 | sox11a | -0.164 |
| lmo4a | 0.222 | lfng | -0.163 |
| tbx16l | 0.218 | tent5c | -0.163 |
| fgf24 | 0.215 | gtf2a1 | -0.162 |
| arg2 | 0.215 | exd2 | -0.161 |