Gene expression UMAP
Other cell groups
all cells |
blastomeres |
PGCs |
endoderm |
axial mesoderm |
muscle  |
mural cells / non-skeletal muscle  |
mesenchyme  |
hematopoietic / vasculature  |
pronephros  |
neural |
spinal cord / glia |
eye |
taste / olfactory |
otic / lateral line |
epidermis |
periderm |
fin |
ionocytes / mucous |
pigment cells |
Expression by stage/cluster
Correlated gene expression
| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| CR749168.1 | 0.105 | id1 | -0.039 |
| pax8 | 0.098 | XLOC-003690 | -0.038 |
| slc30a2 | 0.098 | mdka | -0.034 |
| pax2a | 0.088 | sox3 | -0.033 |
| BX293567.1 | 0.087 | XLOC-003689 | -0.032 |
| BX255913.2 | 0.084 | notch3 | -0.032 |
| XLOC-036624 | 0.084 | her15.1 | -0.032 |
| ppp1r14ab | 0.078 | cldn5a | -0.031 |
| p2ry13 | 0.076 | hmgb2a | -0.030 |
| CR382325.1 | 0.076 | fabp7a | -0.029 |
| zgc:101699 | 0.073 | msna | -0.029 |
| BX511224.1 | 0.072 | cd82a | -0.028 |
| si:dkey-175g6.2 | 0.070 | msi1 | -0.028 |
| lhx1a | 0.069 | gpm6bb | -0.028 |
| XLOC-037763 | 0.067 | cd81a | -0.027 |
| pax2b | 0.064 | sb:cb81 | -0.027 |
| slc32a1 | 0.064 | si:ch73-281n10.2 | -0.027 |
| cxxc4 | 0.063 | her4.1 | -0.027 |
| lbx1a | 0.063 | sparc | -0.026 |
| XLOC-005615 | 0.063 | sox19a | -0.026 |
| si:dkey-234i14.2 | 0.062 | vamp3 | -0.026 |
| lgi1b | 0.062 | btg2 | -0.026 |
| jagn1a | 0.062 | COX7A2 (1 of many) | -0.026 |
| scrt1a | 0.060 | tuba8l | -0.026 |
| gad2 | 0.060 | her12 | -0.026 |
| syn3 | 0.059 | atp1a1b | -0.025 |
| dclk2a | 0.059 | si:ch211-286b5.5 | -0.025 |
| XLOC-023447 | 0.058 | lfng | -0.025 |
| hoxa9a | 0.058 | XLOC-003692 | -0.025 |
| iqsec1b | 0.058 | fosab | -0.025 |
| neurod6b | 0.057 | cd63 | -0.024 |
| si:dkey-247m21.3 | 0.057 | dap1b | -0.024 |
| slc9a1b.1 | 0.057 | qki2 | -0.024 |
| LOC110440176 | 0.056 | sox2 | -0.024 |
| hoxb9a | 0.054 | stmn1a | -0.023 |