| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| msx1b | 0.276 | vwde | -0.098 |
| msx3 | 0.264 | dlx4a | -0.094 |
| msx2b | 0.222 | col6a2 | -0.087 |
| bambib | 0.170 | col1a1b | -0.085 |
| id2a | 0.151 | emx2 | -0.083 |
| smad6a | 0.148 | rgmd | -0.082 |
| isl2a | 0.147 | dlx4b | -0.079 |
| zgc:114181 | 0.142 | nr2f1b | -0.076 |
| smad9 | 0.141 | col5a2a | -0.073 |
| smad7 | 0.139 | shox | -0.073 |
| ca6 | 0.138 | barx1 | -0.073 |
| prrx1b | 0.134 | spon2b | -0.069 |
| prrx1a | 0.134 | nid1a | -0.069 |
| id1 | 0.133 | col6a1 | -0.069 |
| gdf6a | 0.132 | sema3bl | -0.068 |
| tpbga | 0.132 | grem2b | -0.067 |
| cdon | 0.130 | osr1 | -0.066 |
| unc5c | 0.130 | smoc1 | -0.065 |
| tnmd | 0.129 | ecrg4a | -0.065 |
| gata2a | 0.129 | cxcl12a | -0.065 |
| csf1b | 0.129 | dlx1a | -0.062 |
| alx4a | 0.127 | osr2 | -0.061 |
| lmx1bb | 0.127 | fgl1 | -0.060 |
| bmper | 0.127 | tmsb | -0.060 |
| bmp2b | 0.124 | lrig1 | -0.060 |
| AL954322.2 | 0.118 | rgmb | -0.059 |
| fstl3 | 0.117 | col4a1 | -0.059 |
| tbx2b | 0.114 | angptl7 | -0.058 |
| lmx1ba | 0.113 | tcf4 | -0.058 |
| tnnt2a | 0.113 | nr2f2 | -0.057 |
| adma | 0.113 | rpl38 | -0.055 |
| zic1 | 0.112 | rps29 | -0.055 |
| tmem88a | 0.112 | ntn1a | -0.055 |
| CR855375.3 | 0.111 | cald1b | -0.055 |
| bmp7b | 0.109 | rbp7b | -0.054 |