| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| lhx1a | 0.523 | sox3 | -0.379 |
| mespab | 0.497 | id1 | -0.318 |
| osr1 | 0.488 | cxcr4b | -0.271 |
| dkk1b | 0.486 | sox19a | -0.263 |
| msgn1 | 0.486 | asb11 | -0.235 |
| gata5 | 0.475 | zic2b | -0.219 |
| FP102169.1 | 0.470 | cited4b | -0.203 |
| gata6 | 0.430 | si:ch1073-80i24.3 | -0.188 |
| foxa | 0.428 | sb:cb81 | -0.187 |
| efnb2b | 0.426 | cxcr4a | -0.183 |
| pitx2 | 0.407 | aldob | -0.179 |
| zic2a | 0.407 | foxd5 | -0.178 |
| lft1 | 0.393 | si:ch211-152c2.3 | -0.144 |
| fgf8a | 0.392 | hmgb2a | -0.141 |
| efnb2a | 0.383 | inka1a | -0.140 |
| cyp27c1 | 0.378 | pfkfb4b | -0.130 |
| BX927327.1 | 0.377 | sox2 | -0.130 |
| ndr2 | 0.376 | shisa2a | -0.120 |
| aldh1a2 | 0.374 | gpd1b | -0.119 |
| dusp4 | 0.373 | foxh1 | -0.117 |
| mespaa | 0.371 | glulb | -0.117 |
| trib3 | 0.370 | alcamb | -0.113 |
| wnt11f2 | 0.368 | atp1b1a | -0.113 |
| tbxta | 0.366 | si:dkey-56m19.5 | -0.109 |
| sp5a | 0.364 | fkbp7 | -0.109 |
| ism1 | 0.360 | anp32b | -0.109 |
| kirrel3l | 0.353 | polr3gla | -0.108 |
| fgf3 | 0.335 | si:ch211-170d8.2 | -0.101 |
| flrt3 | 0.333 | mex3b | -0.101 |
| sebox | 0.332 | crabp2b | -0.097 |
| snai1a | 0.329 | pkdccb | -0.094 |
| fscn1a | 0.328 | si:ch73-1a9.3 | -0.094 |
| aplnra | 0.326 | anp32a | -0.092 |
| ndr1 | 0.318 | her8a | -0.092 |
| efna1a | 0.316 | nnr | -0.089 |