| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| tbxta | 0.377 | sox3 | -0.313 |
| lhx1a | 0.359 | cited4b | -0.222 |
| msgn1 | 0.335 | id1 | -0.205 |
| FP102169.1 | 0.334 | sox19a | -0.198 |
| wnt11f2 | 0.332 | cxcr4b | -0.196 |
| efnb2b | 0.329 | glulb | -0.158 |
| kirrel3l | 0.325 | shisa2a | -0.158 |
| mespab | 0.322 | inka1a | -0.149 |
| aldh1a2 | 0.313 | si:ch1073-80i24.3 | -0.139 |
| p4ha2 | 0.305 | zic2b | -0.138 |
| sebox | 0.305 | asb11 | -0.136 |
| BX927327.1 | 0.300 | cxcr4a | -0.125 |
| osr1 | 0.300 | foxd5 | -0.121 |
| gata5 | 0.295 | blf | -0.119 |
| ndr2 | 0.295 | zgc:100951 | -0.109 |
| zic2a | 0.290 | mex3b | -0.102 |
| wu:fb97g03 | 0.286 | cdca7a | -0.101 |
| efnb2a | 0.284 | si:ch211-170d8.2 | -0.099 |
| fscn1a | 0.284 | zgc:64022 | -0.099 |
| cyp27c1 | 0.283 | snai2 | -0.098 |
| ism1 | 0.280 | aldob | -0.094 |
| flrt3 | 0.275 | ppdpfb | -0.094 |
| dkk1b | 0.273 | si:ch211-173m16.2 | -0.093 |
| foxa | 0.272 | si:dkey-11o15.10 | -0.092 |
| im:7138239 | 0.268 | h3f3d | -0.091 |
| gata6 | 0.268 | sb:cb81 | -0.090 |
| sp5a | 0.267 | foxh1 | -0.086 |
| wnt5b | 0.267 | sec61b | -0.086 |
| notum1a | 0.266 | gpd1b | -0.085 |
| aplnrb | 0.264 | stk35l | -0.079 |
| tbx16 | 0.263 | wee2 | -0.079 |
| dusp4 | 0.248 | sox19b | -0.079 |
| efna1a | 0.247 | dnajb1b | -0.079 |
| fgf8a | 0.246 | pkdccb | -0.079 |
| mespaa | 0.246 | nanog | -0.078 |