| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nanog | 0.194 | NC-002333.4 | -0.191 |
| ccna1 | 0.185 | hmgb2a | -0.128 |
| npc2 | 0.177 | hspb1 | -0.107 |
| cldnd | 0.176 | tbxta | -0.106 |
| h1m | 0.170 | hmgn6 | -0.102 |
| cdca7a | 0.167 | cdx4 | -0.102 |
| ccnb1 | 0.165 | si:ch211-222l21.1 | -0.101 |
| ccna2 | 0.165 | ptmab | -0.101 |
| lamp2 | 0.165 | hmga1a | -0.097 |
| blf | 0.163 | eef1a1l1 | -0.096 |
| gtf2a1 | 0.160 | si:ch73-1a9.3 | -0.093 |
| h2af1al | 0.160 | rplp1 | -0.092 |
| acp5a | 0.160 | ybx1 | -0.087 |
| si:dkey-68o6.5 | 0.160 | npm1a | -0.085 |
| mkrn4 | 0.160 | apoc1 | -0.084 |
| spink2.1 | 0.157 | ncl | -0.084 |
| cdc6 | 0.156 | hnrnpa0b | -0.077 |
| inka1a | 0.152 | si:ch211-152c2.3 | -0.072 |
| zgc:77118 | 0.152 | akap12b | -0.071 |
| si:dkey-42i9.4 | 0.151 | wu:fb97g03 | -0.071 |
| ctss2.1 | 0.151 | sox2 | -0.070 |
| ccnb2 | 0.151 | dynll1 | -0.069 |
| wee2 | 0.149 | zgc:110425 | -0.068 |
| thy1 | 0.146 | efnb2b | -0.067 |
| zgc:100951 | 0.143 | stm | -0.066 |
| dctpp1 | 0.142 | wnt11f2 | -0.064 |
| rpa3 | 0.142 | wnt5b | -0.064 |
| zgc:113424 | 0.141 | tpbga | -0.063 |
| zgc:173742 | 0.141 | sebox | -0.062 |
| oclna | 0.140 | si:dkey-151g10.6 | -0.062 |
| pttg1 | 0.140 | si:dkeyp-2e4.3 | -0.062 |
| epcam | 0.140 | eve1 | -0.062 |
| dnajc1 | 0.139 | rpl7a | -0.061 |
| si:rp71-45k5.2 | 0.137 | mespab | -0.061 |
| cldng | 0.136 | pitx2 | -0.061 |