| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nanog | 0.184 | NC-002333.4 | -0.167 |
| gtf2a1 | 0.167 | hmgb2a | -0.092 |
| blf | 0.165 | eef1a1l1 | -0.087 |
| si:dkey-68o6.5 | 0.161 | hmgn6 | -0.087 |
| mkrn4 | 0.160 | hmgn2 | -0.085 |
| rbm7 | 0.157 | alcamb | -0.081 |
| lamp2 | 0.157 | sox2 | -0.080 |
| npc2 | 0.155 | ptmab | -0.080 |
| dnajc1 | 0.152 | mid1ip1b | -0.077 |
| h1m | 0.152 | pkdccb | -0.077 |
| cldnd | 0.147 | si:ch211-222l21.1 | -0.077 |
| epcam | 0.140 | mt-co2 | -0.074 |
| spink2.1 | 0.140 | ybx1 | -0.069 |
| ccna1 | 0.139 | mt-co1 | -0.068 |
| zgc:56676 | 0.139 | rpl7a | -0.067 |
| cdca7a | 0.135 | crabp2b | -0.066 |
| abhd10b | 0.135 | rplp0 | -0.065 |
| ccna2 | 0.135 | rpl7 | -0.065 |
| psme3 | 0.135 | her3 | -0.065 |
| oclna | 0.133 | rps6 | -0.063 |
| inka1a | 0.131 | rplp1 | -0.061 |
| si:dkey-42i9.4 | 0.131 | hnrnpa0b | -0.061 |
| zgc:173742 | 0.129 | hspb1 | -0.060 |
| ube2g1a | 0.129 | npm1a | -0.060 |
| gclc | 0.129 | ncl | -0.058 |
| acp5a | 0.129 | si:ch73-141c7.1 | -0.057 |
| glulb | 0.127 | slkb | -0.057 |
| prkrip1 | 0.126 | cdx1a | -0.057 |
| pho | 0.124 | si:ch73-1a9.3 | -0.057 |
| h2af1al | 0.123 | rpl11 | -0.056 |
| BX005461.1 | 0.123 | sp5l | -0.056 |
| zfand5b | 0.123 | slc16a9b | -0.055 |
| map7d1a | 0.122 | XLOC-039121 | -0.055 |
| pinx1 | 0.122 | BX927258.1 | -0.054 |
| tram1 | 0.122 | LOC103910859 | -0.054 |