| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| eno4 | 0.431 | mab21l1 | -0.058 |
| vax2 | 0.332 | meis1b | -0.057 |
| six6a | 0.311 | ebf3a | -0.056 |
| six6b | 0.242 | mab21l2 | -0.055 |
| dlx2a | 0.209 | hoxb3a | -0.052 |
| sox1b | 0.203 | irx1a | -0.052 |
| dlx1a | 0.201 | pax3a | -0.051 |
| fzd5 | 0.195 | nrn1a | -0.051 |
| fezf1 | 0.185 | en2b | -0.048 |
| dlx5a | 0.185 | sb:cb81 | -0.048 |
| dlx2b | 0.181 | irx5a | -0.047 |
| six3b | 0.176 | scrt2 | -0.045 |
| nkx2.2b | 0.173 | irx3b | -0.045 |
| six3a | 0.156 | rbfox1 | -0.044 |
| fgfrl1a | 0.154 | rarga | -0.044 |
| dlx6a | 0.152 | irx3a | -0.043 |
| si:dkeyp-110a12.4 | 0.143 | ebf1a | -0.042 |
| shha | 0.137 | meis2b | -0.042 |
| arxa | 0.134 | si:ch211-57n23.4 | -0.042 |
| bmpr1ba | 0.132 | pax7a | -0.041 |
| nkx2.2a | 0.132 | pou3f1 | -0.041 |
| lhx8a | 0.129 | apoeb | -0.040 |
| nkx2.1 | 0.124 | tfap2a | -0.040 |
| lhx8b | 0.124 | msx1b | -0.039 |
| sp9 | 0.122 | si:ch211-152c2.3 | -0.039 |
| rgmd | 0.121 | scrt1a | -0.038 |
| zgc:174888 | 0.120 | ebf2 | -0.038 |
| shtn1 | 0.118 | adcyap1b | -0.038 |
| si:ch211-1o7.3 | 0.107 | vim | -0.037 |
| isl1 | 0.102 | irx1b | -0.037 |
| sox1a | 0.102 | apela | -0.037 |
| nog2 | 0.102 | lhx9 | -0.037 |
| rrad | 0.100 | hspb1 | -0.037 |
| lrig1 | 0.100 | uncx | -0.037 |
| LOC108191313 | 0.097 | pax7b | -0.036 |