| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| eomesa | 0.485 | hmgb2a | -0.095 |
| tbr1a | 0.352 | id1 | -0.088 |
| emx3 | 0.336 | pcna | -0.084 |
| emx1 | 0.292 | stmn1a | -0.082 |
| foxg1a | 0.266 | npm1a | -0.079 |
| CDHR1 (1 of many) | 0.265 | sox3 | -0.079 |
| neurod6b | 0.243 | selenoh | -0.076 |
| susd5 | 0.204 | ccnd1 | -0.074 |
| slc17a6a | 0.195 | msna | -0.073 |
| r3hdm1 | 0.195 | sox19a | -0.072 |
| tbx21 | 0.192 | chaf1a | -0.072 |
| tp73 | 0.191 | banf1 | -0.072 |
| grm2a | 0.176 | nop58 | -0.072 |
| nrn1a | 0.173 | ranbp1 | -0.071 |
| cpne2 | 0.168 | anp32b | -0.071 |
| ek1 | 0.168 | dkc1 | -0.070 |
| tmem163b | 0.167 | nasp | -0.070 |
| celf2 | 0.167 | mki67 | -0.069 |
| adcyap1b | 0.162 | tuba8l | -0.068 |
| lhx9 | 0.157 | cdca7b | -0.068 |
| gabrr2b | 0.153 | snu13b | -0.068 |
| islr2 | 0.152 | vamp3 | -0.068 |
| mef2ab | 0.151 | XLOC-003690 | -0.068 |
| sox4a | 0.150 | mcm6 | -0.068 |
| necab1 | 0.149 | rrm1 | -0.068 |
| camk2n1a | 0.145 | lig1 | -0.068 |
| olfm1a | 0.145 | COX7A2 (1 of many) | -0.067 |
| si:dkey-90l8.3 | 0.144 | akap12b | -0.066 |
| efnb2a | 0.140 | ccng1 | -0.066 |
| draxin | 0.138 | lbr | -0.066 |
| LO017848.1 | 0.137 | fen1 | -0.065 |
| LOC103909284 | 0.132 | sdc4 | -0.065 |
| mef2aa | 0.132 | rsl1d1 | -0.065 |
| lhx5 | 0.131 | mcm7 | -0.065 |
| ptprdb | 0.129 | nop56 | -0.065 |