| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| shha | 0.393 | cyt1 | -0.227 |
| shhb | 0.337 | cyt1l | -0.201 |
| sox2 | 0.309 | si:dkey-16p21.8 | -0.191 |
| pitx1 | 0.280 | krt5 | -0.189 |
| foxa2 | 0.259 | krtt1c19e | -0.181 |
| nkx3.3 | 0.250 | col2a1b | -0.176 |
| ociad2 | 0.230 | rbp4 | -0.174 |
| ptch2 | 0.228 | col1a2 | -0.173 |
| inhbaa | 0.222 | zgc:175088 | -0.172 |
| fxyd1 | 0.210 | si:dkey-33c14.3 | -0.161 |
| sox4b | 0.208 | col1a1b | -0.161 |
| fgfrl1b | 0.192 | col11a1a | -0.159 |
| hmgn2 | 0.191 | lgals1l1 | -0.156 |
| krt18a.1 | 0.191 | spaca4l | -0.155 |
| dnmt3bb.1 | 0.188 | thy1 | -0.154 |
| fgfrl1a | 0.184 | col1a1a | -0.151 |
| ephb4a | 0.183 | zgc:136930 | -0.149 |
| si:dkey-208c12.2 | 0.183 | ecrg4b | -0.149 |
| pitx2 | 0.182 | col5a1 | -0.146 |
| avpr2aa | 0.181 | pfn1 | -0.144 |
| barx1 | 0.173 | aep1 | -0.143 |
| hmgb1b | 0.172 | col14a1b | -0.142 |
| anos1a | 0.172 | si:dkey-183i3.5 | -0.140 |
| fabp2 | 0.171 | krt4 | -0.139 |
| inka1a | 0.171 | wu:fa03e10 | -0.139 |
| wnt11r | 0.169 | actb2 | -0.137 |
| artnb | 0.168 | col17a1a | -0.135 |
| sostdc1a | 0.168 | pleca | -0.133 |
| icn | 0.167 | kera | -0.132 |
| si:ch211-156b7.4 | 0.167 | sparc | -0.132 |
| h3f3a | 0.163 | si:ch211-166a6.5 | -0.131 |
| hmgb2b | 0.162 | ptgdsb.1 | -0.130 |
| si:ch1073-303k11.2 | 0.159 | DSG2 | -0.129 |
| si:ch211-51i16.1 | 0.159 | hdlbpa | -0.129 |
| apln | 0.159 | itgb3a | -0.127 |