| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| crx | 0.217 | pax6a | -0.119 |
| otx5 | 0.205 | pax6b | -0.118 |
| ddah2 | 0.193 | id1 | -0.091 |
| zgc:109965 | 0.188 | npm1a | -0.085 |
| prdm1a | 0.180 | ranbp1 | -0.084 |
| si:dkey-21o19.2 | 0.180 | mcm6 | -0.084 |
| btg1 | 0.177 | sox2 | -0.083 |
| rdh8a | 0.173 | cdca7b | -0.082 |
| gngt2a | 0.170 | dkc1 | -0.081 |
| neurod1 | 0.168 | elavl3 | -0.081 |
| zgc:112294 | 0.167 | mcm5 | -0.079 |
| ndrg1b | 0.163 | cdca7a | -0.078 |
| fkbp1ab | 0.156 | nhp2 | -0.078 |
| opn6a | 0.153 | nop58 | -0.078 |
| slc3a2b | 0.150 | mcm2 | -0.078 |
| samd7 | 0.149 | mcm3 | -0.077 |
| rxrgb | 0.148 | zfp36l1a | -0.077 |
| tmem108 | 0.147 | pprc1 | -0.077 |
| si:ch73-28h20.1 | 0.147 | cad | -0.077 |
| elovl4b | 0.144 | rrs1 | -0.076 |
| rxrga | 0.142 | pcna | -0.075 |
| nr2f1b | 0.141 | eif4ebp3l | -0.075 |
| smad7 | 0.141 | nop2 | -0.075 |
| anp32e | 0.140 | si:dkey-102m7.3 | -0.074 |
| tmem244 | 0.138 | snu13b | -0.073 |
| tulp1a | 0.136 | lig1 | -0.073 |
| si:dkey-220f10.4 | 0.136 | ssb | -0.072 |
| XLOC-014477 | 0.135 | tmsb4x | -0.072 |
| tmx3a | 0.135 | gnl3 | -0.072 |
| dscamb | 0.133 | nat8l | -0.071 |
| ckbb | 0.132 | mcm7 | -0.071 |
| arl13a | 0.132 | si:ch211-152c2.3 | -0.070 |
| aplnrb | 0.131 | fbl | -0.069 |
| zgc:103625 | 0.130 | hells | -0.069 |
| hsp90aa1.2 | 0.130 | fzd5 | -0.069 |