| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| cth1 | 0.210 | sox3 | -0.144 |
| snai1a | 0.189 | si:ch211-222l21.1 | -0.142 |
| nanog | 0.182 | hmgb2a | -0.135 |
| FP102169.1 | 0.177 | si:ch211-152c2.3 | -0.132 |
| si:dkey-261j4.5 | 0.176 | aldob | -0.128 |
| xbp1 | 0.175 | id1 | -0.127 |
| lhx1a | 0.173 | polr3gla | -0.124 |
| npc2 | 0.171 | eef1a1l1 | -0.123 |
| trib3 | 0.168 | sox19a | -0.122 |
| dnajc1 | 0.166 | rplp1 | -0.117 |
| foxa | 0.165 | add3b | -0.114 |
| vgll4l | 0.164 | sox2 | -0.112 |
| osr1 | 0.161 | anp32e | -0.109 |
| spink2.1 | 0.159 | si:ch73-1a9.3 | -0.108 |
| aplnrb | 0.159 | si:dkey-56m19.5 | -0.102 |
| mespab | 0.156 | anp32b | -0.101 |
| gtf2a1 | 0.154 | npm1a | -0.100 |
| h1m | 0.153 | NC-002333.4 | -0.100 |
| ccna1 | 0.150 | zic2b | -0.099 |
| acp5a | 0.149 | dynll1 | -0.094 |
| dkk1b | 0.149 | ncl | -0.093 |
| rbm7 | 0.149 | rps6 | -0.092 |
| tbx16 | 0.148 | prdm14 | -0.091 |
| gata5 | 0.147 | hnrnpa0b | -0.091 |
| gata6 | 0.146 | si:ch1073-80i24.3 | -0.089 |
| rcor1 | 0.146 | rps15a | -0.089 |
| cldnd | 0.144 | alcamb | -0.088 |
| ism1 | 0.144 | rplp0 | -0.087 |
| zgc:56676 | 0.144 | hspe1 | -0.087 |
| zgc:77118 | 0.143 | hspb1 | -0.085 |
| mkrn4 | 0.142 | her3 | -0.084 |
| zic2a | 0.142 | pkdccb | -0.084 |
| dusp4 | 0.142 | nop2 | -0.083 |
| blf | 0.141 | gnl3 | -0.082 |
| tent4b | 0.140 | rpl27 | -0.082 |