| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nkx2.4b | 0.292 | ptmaa | -0.105 |
| fzd5 | 0.278 | marcksl1b | -0.102 |
| shha | 0.252 | rtn1a | -0.100 |
| six3b | 0.242 | elavl3 | -0.098 |
| nkx2.4a | 0.226 | stmn1b | -0.095 |
| sfrp5 | 0.197 | gpm6aa | -0.095 |
| id3 | 0.183 | tmsb4x | -0.091 |
| foxd1 | 0.166 | tmsb | -0.088 |
| fgfrl1a | 0.165 | tuba1c | -0.086 |
| six3a | 0.163 | gpm6ab | -0.086 |
| slc1a3b | 0.160 | hmgb3a | -0.085 |
| her9 | 0.158 | tubb5 | -0.083 |
| six6b | 0.147 | gng3 | -0.077 |
| nkx2.1 | 0.144 | sncb | -0.075 |
| si:dkeyp-110a12.4 | 0.135 | CR383676.1 | -0.074 |
| fezf2 | 0.132 | tmeff1b | -0.073 |
| sox1b | 0.132 | rtn1b | -0.072 |
| il34 | 0.130 | elavl4 | -0.072 |
| zgc:174888 | 0.129 | atp6v0cb | -0.071 |
| six6a | 0.126 | zc4h2 | -0.070 |
| nkx2.2b | 0.124 | rnasekb | -0.067 |
| rx2 | 0.123 | vamp2 | -0.066 |
| swap70b | 0.123 | dpysl3 | -0.066 |
| six7 | 0.122 | fez1 | -0.066 |
| fzd8b | 0.120 | si:dkey-276j7.1 | -0.066 |
| npm1a | 0.118 | stx1b | -0.065 |
| XLOC-003718 | 0.114 | COX3 | -0.065 |
| tbx2b | 0.111 | zfhx3 | -0.065 |
| dkc1 | 0.110 | cd99l2 | -0.064 |
| rsl1d1 | 0.109 | ywhag2 | -0.064 |
| snu13b | 0.109 | stmn2a | -0.064 |
| nop58 | 0.108 | si:dkeyp-75h12.5 | -0.064 |
| fzd8a | 0.107 | atp6v1e1b | -0.063 |
| smtnl | 0.107 | ckbb | -0.063 |
| ranbp1 | 0.107 | gng2 | -0.063 |