| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| pax8 | 0.589 | id1 | -0.213 |
| pax2b | 0.534 | XLOC-003690 | -0.207 |
| slc32a1 | 0.502 | msna | -0.189 |
| lhx1a | 0.485 | hmgb2a | -0.183 |
| slc6a5 | 0.457 | cldn5a | -0.182 |
| XLOC-005615 | 0.433 | her15.1 | -0.173 |
| slc30a2 | 0.427 | notch3 | -0.164 |
| otpb | 0.397 | vamp3 | -0.161 |
| lhx5 | 0.379 | sox3 | -0.161 |
| cacna2d3 | 0.375 | mdka | -0.159 |
| bhlhe22 | 0.368 | cd81a | -0.156 |
| scrt1a | 0.363 | sdc4 | -0.156 |
| klhl14 | 0.329 | msi1 | -0.156 |
| sncgb | 0.328 | tuba8l4 | -0.153 |
| en1b | 0.327 | fosab | -0.153 |
| znf385c | 0.326 | tubb4b | -0.151 |
| si:dkey-175g6.2 | 0.307 | XLOC-003689 | -0.151 |
| stxbp1a | 0.303 | cd82a | -0.149 |
| otpa | 0.299 | sox19a | -0.144 |
| scrt2 | 0.294 | stmn1a | -0.144 |
| LOC100330246 | 0.294 | si:ch73-281n10.2 | -0.143 |
| stx1b | 0.292 | COX7A2 (1 of many) | -0.141 |
| nrxn1a | 0.290 | sparc | -0.139 |
| cbfa2t3 | 0.288 | zgc:56493 | -0.139 |
| dmrt3a | 0.286 | actb2 | -0.139 |
| mab21l2 | 0.283 | tuba8l | -0.139 |
| hoxb9a | 0.277 | her12 | -0.138 |
| ube2ql1 | 0.269 | selenoh | -0.138 |
| lbx1a | 0.269 | ccng1 | -0.136 |
| nsg2 | 0.269 | si:ch73-265d7.2 | -0.135 |
| vamp2 | 0.268 | her4.1 | -0.135 |
| elavl3 | 0.267 | fabp7a | -0.135 |
| nrxn3a | 0.264 | cd63 | -0.134 |
| jagn1a | 0.263 | dut | -0.134 |
| myt1b | 0.257 | btg2 | -0.134 |