| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| prdm1a | 0.115 | mir181b-3 | -0.057 |
| si:dkey-21o19.2 | 0.115 | elavl3 | -0.054 |
| neurod1 | 0.103 | pax6b | -0.054 |
| si:ch73-28h20.1 | 0.101 | pax10 | -0.053 |
| XLOC-014477 | 0.099 | atp1b3a | -0.053 |
| dnmbp | 0.090 | slc32a1 | -0.052 |
| zbtb18 | 0.089 | fxyd6l | -0.052 |
| plekhg5b | 0.088 | fezf2 | -0.051 |
| fabp7a | 0.088 | h2afx1 | -0.050 |
| msi1 | 0.087 | gng3 | -0.049 |
| gngt2a | 0.086 | pax6a | -0.049 |
| zgc:109965 | 0.084 | gng2 | -0.049 |
| XLOC-004335 | 0.084 | stxbp1a | -0.048 |
| crx | 0.084 | zc4h2 | -0.047 |
| opn6a | 0.083 | rbfox2 | -0.045 |
| zgc:112294 | 0.082 | fthl27 | -0.044 |
| pde6gb | 0.081 | eno2 | -0.043 |
| ncam1a | 0.081 | zfhx4 | -0.043 |
| nr2f1b | 0.080 | celf5a | -0.043 |
| aplnrb | 0.080 | rtn1b | -0.042 |
| rxrgb | 0.079 | hmgn7 | -0.042 |
| lhx4 | 0.079 | calb2b | -0.042 |
| prdm1b | 0.079 | si:ch73-290k24.5 | -0.042 |
| otx5 | 0.077 | tbx3a | -0.041 |
| rgcc | 0.077 | mycn | -0.041 |
| smad7 | 0.077 | tmsb4x | -0.040 |
| dscamb | 0.076 | mcm3 | -0.040 |
| pcdh8 | 0.076 | tfap2a | -0.040 |
| nr2e3 | 0.075 | fabp3 | -0.040 |
| prox1a | 0.074 | npm1a | -0.039 |
| cd82a | 0.074 | tfap2b | -0.039 |
| znf516 | 0.074 | cdca7a | -0.039 |
| btg1 | 0.073 | st8sia5 | -0.039 |
| RASSF5 | 0.073 | sfrp1a | -0.039 |
| olig2 | 0.073 | LOC101886114 | -0.039 |