| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| msx1b | 0.278 | foxc1b | -0.100 |
| bambia | 0.222 | fgfbp2b | -0.091 |
| msx3 | 0.212 | cnmd | -0.087 |
| cdon | 0.175 | foxp4 | -0.074 |
| lmx1a | 0.158 | col2a1a | -0.074 |
| prrx1b | 0.147 | col11a2 | -0.069 |
| ca6 | 0.144 | nkx3.2 | -0.069 |
| csf1a | 0.144 | matn1 | -0.068 |
| id1 | 0.136 | cxcl12a | -0.068 |
| zgc:114181 | 0.135 | sparc | -0.067 |
| lmx1ba | 0.134 | col9a3 | -0.067 |
| smad9 | 0.131 | ecrg4a | -0.066 |
| zic1 | 0.127 | col1a1b | -0.066 |
| msx1a | 0.126 | CABZ01092746.1 | -0.064 |
| tpbga | 0.122 | zgc:162730 | -0.063 |
| prrx1a | 0.121 | si:ch1073-459j12.1 | -0.063 |
| csf1b | 0.120 | col9a2 | -0.063 |
| lmx1bb | 0.117 | col9a1a | -0.063 |
| si:dkey-1c11.1 | 0.115 | vwde | -0.063 |
| alx4a | 0.114 | epyc | -0.062 |
| fabp7b | 0.112 | igfbp5b | -0.061 |
| qdpra | 0.111 | ier2b | -0.061 |
| cldn5a | 0.111 | osr1 | -0.059 |
| ved | 0.110 | col11a1a | -0.058 |
| smad6a | 0.108 | ucmab | -0.058 |
| pcbd1 | 0.107 | sfrp2 | -0.057 |
| gata2a | 0.107 | krt15 | -0.057 |
| nog1 | 0.106 | serpinf1 | -0.057 |
| zic4 | 0.102 | rbp4 | -0.057 |
| crabp2a | 0.102 | col8a2 | -0.056 |
| hepacama | 0.101 | meox1 | -0.056 |
| atoh8 | 0.100 | mia | -0.054 |
| gpr143 | 0.098 | anxa1a | -0.054 |
| adra1ba | 0.097 | VIT | -0.054 |
| twist3 | 0.097 | angptl7 | -0.054 |