| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| her4.1 | 0.484 | snap25b | -0.276 |
| her4.2 | 0.484 | atp6v0cb | -0.276 |
| her15.1 | 0.474 | gapdhs | -0.249 |
| si:ch73-21g5.7 | 0.474 | syt5b | -0.238 |
| XLOC-003690 | 0.473 | sypb | -0.231 |
| her12 | 0.468 | atp6v1e1b | -0.224 |
| notch3 | 0.455 | rnasekb | -0.218 |
| XLOC-003689 | 0.433 | atpv0e2 | -0.217 |
| LOC798783 | 0.433 | ckbb | -0.209 |
| XLOC-003692 | 0.427 | rs1a | -0.200 |
| notch1b | 0.424 | atp6v1g1 | -0.199 |
| id1 | 0.391 | vamp2 | -0.194 |
| CU467822.1 | 0.389 | sncb | -0.186 |
| LOC101886429 | 0.388 | ndrg4 | -0.184 |
| fzd5 | 0.388 | calb2b | -0.183 |
| mdka | 0.380 | otx5 | -0.183 |
| sox9b | 0.379 | atp1a3a | -0.182 |
| her4.4 | 0.378 | calm1a | -0.180 |
| abhd6a | 0.378 | atp1b2a | -0.180 |
| CR848047.1 | 0.374 | crx | -0.177 |
| dla | 0.373 | sh3gl2a | -0.177 |
| CU634008.1 | 0.359 | gng3 | -0.176 |
| rrm1 | 0.357 | tpi1b | -0.172 |
| ascl1a | 0.345 | olfm1b | -0.169 |
| ncalda | 0.343 | pcbp3 | -0.168 |
| si:dkey-238o13.4 | 0.338 | atp6ap2 | -0.165 |
| akap12b | 0.333 | gng13b | -0.162 |
| pou3f1 | 0.330 | gnao1b | -0.161 |
| si:ch73-215f7.1 | 0.329 | ppdpfb | -0.161 |
| sox3 | 0.328 | cplx4a | -0.161 |
| cldn5b | 0.328 | cnrip1b | -0.159 |
| notch1a | 0.325 | lin7a | -0.159 |
| ccnd1 | 0.321 | gnb5b | -0.159 |
| nrarpb | 0.321 | cpe | -0.158 |
| pcna | 0.320 | si:dkey-16p21.8 | -0.157 |