| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r | 
| her3 | 0.194 | ved | -0.147 | 
| pkdccb | 0.154 | tbx16 | -0.138 | 
| lhx5 | 0.137 | si:dkey-261j4.5 | -0.096 | 
| otx2a | 0.133 | eve1 | -0.095 | 
| sox2 | 0.123 | tbxta | -0.092 | 
| hmgb2a | 0.116 | h1m | -0.089 | 
| hesx1 | 0.112 | gtf2a1 | -0.087 | 
| si:ch211-152c2.3 | 0.112 | bambia | -0.084 | 
| alcamb | 0.110 | ddit4 | -0.084 | 
| sfrp1a | 0.108 | rbm7 | -0.084 | 
| aldob | 0.108 | acp5a | -0.082 | 
| si:ch211-222l21.1 | 0.107 | zgc:173742 | -0.082 | 
| otx2b | 0.107 | tob1a | -0.082 | 
| hspb1 | 0.105 | cdx4 | -0.080 | 
| foxd5 | 0.104 | mkrn4 | -0.080 | 
| sox19a | 0.101 | dnajc1 | -0.077 | 
| hnrnpa0b | 0.100 | h2af1al | -0.077 | 
| eef1a1l1 | 0.099 | nanog | -0.075 | 
| zic3 | 0.098 | zgc:56676 | -0.075 | 
| sp5l | 0.098 | vgll4l | -0.074 | 
| si:ch73-1a9.3 | 0.097 | wnt11f2 | -0.073 | 
| polr3gla | 0.095 | STMP1 | -0.072 | 
| anp32a | 0.095 | xbp1 | -0.072 | 
| irx7 | 0.093 | dctpp1 | -0.070 | 
| foxd3 | 0.092 | si:dkey-261j4.3 | -0.069 | 
| rps6 | 0.088 | cldnd | -0.069 | 
| prdm14 | 0.087 | spink2.1 | -0.067 | 
| lfng | 0.085 | hes6 | -0.066 | 
| six3a | 0.085 | gpatch4 | -0.066 | 
| gna14 | 0.085 | si:dkeyp-2e4.3 | -0.066 | 
| sox3 | 0.084 | bmp7a | -0.065 | 
| her8a | 0.083 | pfn2 | -0.065 | 
| rpl7 | 0.082 | ywhaqa | -0.064 | 
| si:ch211-170d8.2 | 0.082 | npc2 | -0.064 | 
| zgc:110353 | 0.081 | tent5c | -0.064 |