| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nanog | 0.212 | NC-002333.4 | -0.162 |
| gtf2a1 | 0.181 | eef1a1l1 | -0.125 |
| ccna1 | 0.178 | ptmab | -0.112 |
| zgc:173742 | 0.177 | si:ch211-222l21.1 | -0.109 |
| h1m | 0.174 | hmgb2a | -0.100 |
| cldnd | 0.173 | ybx1 | -0.096 |
| spink2.1 | 0.172 | rplp1 | -0.096 |
| cdca7a | 0.171 | hmgn2 | -0.096 |
| si:dkey-68o6.5 | 0.171 | rps6 | -0.094 |
| lamp2 | 0.170 | apoc1 | -0.092 |
| npc2 | 0.169 | cdx4 | -0.091 |
| dnajc1 | 0.166 | hspb1 | -0.090 |
| mkrn4 | 0.165 | si:ch211-152c2.3 | -0.090 |
| blf | 0.164 | hmgn6 | -0.089 |
| ccna2 | 0.164 | rpl13 | -0.088 |
| glulb | 0.160 | ncl | -0.087 |
| acp5a | 0.158 | npm1a | -0.087 |
| rbm7 | 0.151 | rpl11 | -0.087 |
| stk35l | 0.151 | rps4x | -0.086 |
| ctsba | 0.151 | sox2 | -0.086 |
| rcor1 | 0.150 | hnrnpa0b | -0.086 |
| cnot8 | 0.150 | rpl7a | -0.085 |
| zgc:100951 | 0.150 | rpl7 | -0.084 |
| vgll4l | 0.149 | hmga1a | -0.084 |
| gdf3 | 0.148 | rps20 | -0.083 |
| pho | 0.146 | si:ch211-137a8.4 | -0.083 |
| epcam | 0.146 | si:ch73-1a9.3 | -0.082 |
| zgc:113424 | 0.143 | rplp0 | -0.081 |
| dctpp1 | 0.142 | polr3gla | -0.079 |
| cdc6 | 0.141 | rps7 | -0.077 |
| cstf3 | 0.140 | rps19 | -0.076 |
| h2af1al | 0.140 | eve1 | -0.076 |
| gpatch4 | 0.140 | rps15a | -0.076 |
| pinx1 | 0.140 | BX927258.1 | -0.074 |
| LOC101885477 | 0.140 | rpsa | -0.074 |