| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hand2 | 0.135 | col11a1a | -0.058 |
| bambia | 0.132 | col11a2 | -0.053 |
| satb2 | 0.123 | cthrc1a | -0.052 |
| si:dkey-1c11.1 | 0.112 | col2a1a | -0.050 |
| msx3 | 0.107 | col9a1a | -0.050 |
| lmx1a | 0.104 | col9a3 | -0.048 |
| msx1b | 0.096 | emx2 | -0.047 |
| sost | 0.091 | mia | -0.045 |
| sfrp5 | 0.090 | epyc | -0.043 |
| rspo3 | 0.086 | col9a2 | -0.043 |
| tmem88b | 0.084 | cnmd | -0.042 |
| jun | 0.084 | rgmd | -0.042 |
| bambib | 0.082 | fxyd1 | -0.041 |
| bmp7b | 0.080 | tuba8l3 | -0.041 |
| fbn2a.1 | 0.079 | tgfbi | -0.041 |
| isl2a | 0.079 | tnxba | -0.041 |
| msx2b | 0.078 | dlx4a | -0.041 |
| rgs5a | 0.077 | matn4 | -0.040 |
| bmp5 | 0.077 | si:dkey-6n6.1 | -0.039 |
| meis1b | 0.077 | dlx4b | -0.038 |
| ftr82 | 0.076 | wisp3 | -0.038 |
| LO018188.1 | 0.075 | grem2b | -0.038 |
| cdon | 0.074 | AL929222.2 | -0.038 |
| smad6a | 0.073 | tnn | -0.038 |
| nppc | 0.073 | fbln7 | -0.037 |
| hoxb3a | 0.072 | snorc | -0.037 |
| col7a1l | 0.071 | fabp3 | -0.036 |
| atoh1a | 0.071 | otos | -0.036 |
| crb2a | 0.071 | pitx3 | -0.036 |
| prrx1b | 0.070 | fgfbp2b | -0.036 |
| prrx1a | 0.069 | tmsb | -0.035 |
| XLOC-028299 | 0.069 | VIT | -0.035 |
| krt8 | 0.068 | copz2 | -0.034 |
| mxra8b | 0.067 | dlx3b | -0.034 |
| rhag | 0.067 | zgc:162879 | -0.034 |