| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| sp9 | 0.150 | her15.1 | -0.044 |
| pax2a | 0.110 | XLOC-003690 | -0.042 |
| si:dkey-7e14.3 | 0.110 | XLOC-003689 | -0.042 |
| foxd3 | 0.105 | hmgb2a | -0.042 |
| en1b | 0.100 | sox3 | -0.038 |
| pax8 | 0.092 | XLOC-003692 | -0.038 |
| pth2 | 0.071 | ahcy | -0.038 |
| pax2b | 0.070 | her4.2 | -0.037 |
| id4 | 0.069 | si:ch73-21g5.7 | -0.036 |
| elavl4 | 0.069 | gas1b | -0.036 |
| si:dkey-234i14.2 | 0.065 | abhd6a | -0.036 |
| en1a | 0.065 | dla | -0.035 |
| nr4a2a | 0.064 | mdka | -0.035 |
| zgc:194210 | 0.064 | stmn1a | -0.035 |
| tmem235 | 0.063 | notch3 | -0.035 |
| slc30a2 | 0.063 | dut | -0.034 |
| LOC103911600 | 0.062 | zgc:56493 | -0.034 |
| bhlhe23 | 0.061 | fabp7a | -0.033 |
| XLOC-005615 | 0.060 | her2 | -0.033 |
| slc6a5 | 0.059 | her4.1 | -0.033 |
| pbx3b | 0.058 | msna | -0.032 |
| pax5 | 0.056 | LOC798783 | -0.032 |
| slc32a1 | 0.056 | COX7A2 (1 of many) | -0.032 |
| klhl14 | 0.055 | gfap | -0.032 |
| cplx2 | 0.053 | msi1 | -0.031 |
| hoxb5b | 0.053 | lfng | -0.031 |
| ube2ql1 | 0.053 | rrm2 | -0.031 |
| gng3 | 0.052 | cldn5a | -0.030 |
| rpp25a | 0.052 | pcna | -0.030 |
| nxph1 | 0.051 | notch1b | -0.030 |
| sncb | 0.051 | zgc:165461 | -0.030 |
| nxph2a | 0.051 | fgfr3 | -0.030 |
| meis2b | 0.051 | plp1a | -0.030 |
| sobpa | 0.050 | hmgb2b | -0.030 |
| irx4a | 0.049 | her4.4 | -0.030 |