| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| foxd3 | 0.237 | XLOC-003690 | -0.091 |
| sp9 | 0.206 | her15.1 | -0.086 |
| bhlhe23 | 0.206 | hmgb2a | -0.081 |
| LOC103911600 | 0.178 | id1 | -0.079 |
| si:dkey-234i14.2 | 0.170 | XLOC-003689 | -0.079 |
| otpb | 0.169 | mdka | -0.078 |
| en1b | 0.148 | sox3 | -0.075 |
| celf4 | 0.142 | cldn5a | -0.073 |
| pcdh11 | 0.140 | zgc:56493 | -0.073 |
| pax2a | 0.140 | actb2 | -0.071 |
| nxph1 | 0.140 | msna | -0.069 |
| slc35g2a | 0.134 | her4.2 | -0.066 |
| pknox2 | 0.133 | XLOC-003692 | -0.066 |
| celf5a | 0.133 | notch3 | -0.065 |
| fstl4 | 0.133 | msi1 | -0.064 |
| esrrga | 0.129 | tubb4b | -0.064 |
| slc32a1 | 0.128 | rpl12 | -0.063 |
| foxp2 | 0.126 | sb:cb81 | -0.063 |
| bhlhe22 | 0.126 | rplp1 | -0.062 |
| sncb | 0.125 | btg2 | -0.062 |
| ube2ql1 | 0.124 | vamp3 | -0.061 |
| pax8 | 0.124 | cd82a | -0.061 |
| pax2b | 0.120 | COX7A2 (1 of many) | -0.061 |
| edil3a | 0.119 | rps2 | -0.061 |
| cbfa2t3 | 0.118 | sdc4 | -0.060 |
| robo2 | 0.118 | sparc | -0.059 |
| sncgb | 0.117 | her4.1 | -0.059 |
| elavl4 | 0.117 | gfap | -0.059 |
| nanos1 | 0.116 | tspan7 | -0.058 |
| gng3 | 0.109 | si:dkey-151g10.6 | -0.057 |
| runx1t1 | 0.108 | tuba8l4 | -0.056 |
| vamp2 | 0.107 | tuba8l | -0.056 |
| dscaml1 | 0.107 | ccng1 | -0.056 |
| neurod6b | 0.107 | si:ch73-21g5.7 | -0.056 |
| XLOC-005615 | 0.106 | sox19a | -0.055 |