see annotation note
Gene expression UMAP
Other cell groups
all cells |
blastomeres |
PGCs |
endoderm |
axial mesoderm |
muscle  |
mural cells / non-skeletal muscle  |
mesenchyme  |
hematopoietic / vasculature  |
pronephros  |
neural |
spinal cord / glia |
eye |
taste / olfactory |
otic / lateral line |
epidermis |
periderm |
fin |
ionocytes / mucous |
pigment cells |
Expression by stage/cluster
Correlated gene expression
| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| vsir | 0.361 | ybx1 | -0.036 |
| p2ry11 | 0.319 | rpl23a | -0.030 |
| aox6 | 0.273 | rpl22l1 | -0.024 |
| pdp1 | 0.249 | slc25a3b | -0.024 |
| gnpat | 0.234 | rpl3 | -0.024 |
| spg11 | 0.211 | cox4i1 | -0.022 |
| CABZ01058046.1 | 0.200 | COX5B | -0.021 |
| mtrf1l | 0.192 | cox6b2 | -0.021 |
| XLOC-013086 | 0.187 | atp5pf | -0.020 |
| eml3 | 0.186 | tmem258 | -0.019 |
| eno2 | 0.180 | ssr4 | -0.019 |
| si:dkey-237i9.1 | 0.180 | rpl5b | -0.019 |
| bin1b | 0.178 | rps17 | -0.019 |
| pfkfb3 | 0.160 | uqcrh | -0.018 |
| opn1sw2 | 0.141 | gpx4b | -0.018 |
| cflara | 0.140 | atp5fa1 | -0.017 |
| cachd1 | 0.140 | atp5pd | -0.017 |
| rbck1 | 0.139 | ahcy | -0.017 |
| c2cd5 | 0.132 | gamt | -0.017 |
| ttc38 | 0.132 | hdlbpa | -0.016 |
| pfkla | 0.128 | atp5mc1 | -0.016 |
| zc3h12b | 0.127 | bhmt | -0.016 |
| cul5a | 0.125 | cnbpa | -0.016 |
| iscub | 0.123 | cox7c | -0.016 |
| gpbp1l1 | 0.121 | mt-nd1 | -0.016 |
| pard6b | 0.119 | suclg1 | -0.016 |
| si:dkey-6n6.2 | 0.119 | dap | -0.016 |
| hsd17b14 | 0.114 | tpi1b | -0.016 |
| tmem199 | 0.113 | uqcrfs1 | -0.016 |
| p2rx4a | 0.111 | cox8a | -0.016 |
| ctsbb | 0.109 | prdx4 | -0.016 |
| mical2b | 0.109 | mgst3b | -0.015 |
| nvl | 0.107 | fth1a | -0.015 |
| lemd3 | 0.107 | eif1axb | -0.015 |
| stk25a | 0.105 | ndufa6 | -0.015 |