| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| six3b | 0.145 | sb:cb81 | -0.054 |
| rx3 | 0.120 | LOC798783 | -0.049 |
| sst1.2 | 0.115 | fabp7a | -0.045 |
| nkx2.4b | 0.113 | pax3a | -0.044 |
| lft1 | 0.094 | stmn1a | -0.044 |
| sfrp5 | 0.092 | gas1b | -0.043 |
| nkx2.1 | 0.090 | si:ch73-21g5.7 | -0.042 |
| fezf2 | 0.085 | hmgb2a | -0.041 |
| shha | 0.083 | lfng | -0.041 |
| il34 | 0.082 | plp1a | -0.040 |
| shhb | 0.081 | dla | -0.040 |
| nkx2.4a | 0.076 | zeb2a | -0.040 |
| fzd8a | 0.075 | mdka | -0.039 |
| six3a | 0.074 | gadd45gb.1 | -0.039 |
| six6a | 0.071 | her4.2 | -0.038 |
| fzd5 | 0.070 | ahcy | -0.038 |
| six7 | 0.069 | boc | -0.038 |
| lhx2b | 0.068 | lrrn1 | -0.038 |
| six6b | 0.063 | tuba8l | -0.038 |
| sox1b | 0.062 | zgc:162944 | -0.037 |
| tmem108 | 0.060 | si:ch211-57n23.4 | -0.037 |
| igfbp3 | 0.060 | her12 | -0.037 |
| shisa2a | 0.056 | dut | -0.037 |
| nkx2.2b | 0.056 | notch1b | -0.036 |
| lhx9 | 0.055 | XLOC-003689 | -0.035 |
| fgf3 | 0.055 | her4.1 | -0.035 |
| si:ch73-335l21.4 | 0.055 | zgc:92242 | -0.035 |
| zc4h2 | 0.055 | her15.1 | -0.035 |
| id3 | 0.053 | notch3 | -0.035 |
| gpm6ab | 0.052 | notch1a | -0.035 |
| gng3 | 0.051 | gpm6bb | -0.034 |
| ier5l | 0.051 | sparc | -0.034 |
| rtn1b | 0.051 | mir219-3 | -0.034 |
| sox4a | 0.050 | msna | -0.034 |
| fez1 | 0.049 | pcna | -0.033 |