| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| rx3 | 0.278 | marcksl1b | -0.105 |
| nkx2.4b | 0.252 | elavl3 | -0.099 |
| sox1b | 0.227 | gpm6ab | -0.091 |
| six3b | 0.225 | stmn1b | -0.089 |
| si:dkeyp-110a12.4 | 0.214 | hmgb3a | -0.089 |
| nkx2.4a | 0.213 | tubb5 | -0.085 |
| six6a | 0.213 | rtn1a | -0.083 |
| prdx1 | 0.209 | cd99l2 | -0.083 |
| fgfrl1a | 0.198 | zc4h2 | -0.082 |
| shha | 0.197 | ebf3a | -0.080 |
| vax2 | 0.196 | tmsb4x | -0.080 |
| vax1 | 0.195 | elavl4 | -0.080 |
| eno4 | 0.189 | scrt2 | -0.078 |
| six6b | 0.188 | rbfox1 | -0.070 |
| nkx2.1 | 0.184 | tmeff1b | -0.068 |
| slc1a3b | 0.176 | si:dkey-276j7.1 | -0.068 |
| sfrp5 | 0.174 | stx1b | -0.068 |
| id3 | 0.170 | mab21l1 | -0.068 |
| six3a | 0.168 | tmsb | -0.068 |
| fezf1 | 0.151 | sncb | -0.068 |
| LOC108191313 | 0.141 | zfhx3 | -0.067 |
| bsx | 0.141 | irx1a | -0.067 |
| fzd8a | 0.136 | pbx3b | -0.066 |
| tbx3a | 0.135 | nova1 | -0.065 |
| rgmd | 0.135 | si:ch73-386h18.1 | -0.065 |
| zgc:174888 | 0.133 | dpysl3 | -0.064 |
| nr2e1 | 0.128 | stmn2a | -0.064 |
| hmga2 | 0.126 | tuba1c | -0.064 |
| nog2 | 0.125 | en2b | -0.064 |
| her9 | 0.125 | gng3 | -0.063 |
| CABZ01030107.1 | 0.125 | tmem59l | -0.063 |
| fezf2 | 0.125 | snap25a | -0.063 |
| nkx2.2b | 0.122 | meis2a | -0.063 |
| si:dkey-219c10.4 | 0.122 | cbfa2t3 | -0.062 |
| sox1a | 0.116 | jpt1b | -0.062 |