| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| atoh1a | 0.289 | ckbb | -0.060 |
| atoh1b | 0.255 | gpm6ab | -0.058 |
| atoh8 | 0.225 | gng3 | -0.057 |
| olig3 | 0.194 | rtn1b | -0.054 |
| wnt10b | 0.188 | sncb | -0.053 |
| msx1b | 0.183 | ywhah | -0.050 |
| olig4 | 0.152 | fez1 | -0.049 |
| msx3 | 0.144 | sox4a | -0.048 |
| wnt1 | 0.136 | tmsb | -0.048 |
| im:7152348 | 0.127 | zc4h2 | -0.048 |
| nr2f6b | 0.119 | elavl4 | -0.048 |
| nog2 | 0.118 | vamp2 | -0.046 |
| her12 | 0.113 | gpm6aa | -0.045 |
| lfng | 0.111 | atp6v0cb | -0.045 |
| lrrn1 | 0.105 | id4 | -0.045 |
| sertad2a | 0.105 | gapdhs | -0.045 |
| cdh6 | 0.104 | stmn1b | -0.044 |
| dld | 0.103 | stx1b | -0.044 |
| cldn5a | 0.103 | gap43 | -0.043 |
| gdf10a | 0.103 | ywhag2 | -0.043 |
| nkd1 | 0.102 | stmn2a | -0.042 |
| mir219-3 | 0.102 | calm2a | -0.042 |
| LOC798783 | 0.102 | csdc2a | -0.042 |
| fstl1a | 0.099 | rtn1a | -0.042 |
| BX957346.1 | 0.098 | zgc:65894 | -0.041 |
| bmp5 | 0.098 | dpysl3 | -0.041 |
| cep131 | 0.097 | nsg2 | -0.041 |
| hoxd4a | 0.097 | stxbp1a | -0.041 |
| epha2a | 0.097 | aplp1 | -0.041 |
| notch3 | 0.094 | gng2 | -0.041 |
| si:ch73-21g5.7 | 0.091 | atp6v1e1b | -0.040 |
| epha4l | 0.091 | rnasekb | -0.040 |
| hoxb3a | 0.088 | si:dkey-276j7.1 | -0.040 |
| cdon | 0.085 | mllt11 | -0.039 |
| id1 | 0.084 | cbx1b | -0.039 |