| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| emx3 | 0.318 | marcksl1b | -0.121 |
| nkx2.4b | 0.290 | rtn1a | -0.109 |
| nkx2.4a | 0.240 | gpm6ab | -0.107 |
| fezf1 | 0.225 | stmn1b | -0.102 |
| id3 | 0.211 | meis1b | -0.101 |
| fgfrl1a | 0.196 | elavl3 | -0.096 |
| sox1b | 0.190 | sncb | -0.091 |
| dmrta2 | 0.173 | zfhx3 | -0.090 |
| zfp36l1a | 0.169 | rbfox1 | -0.088 |
| six3b | 0.166 | si:ch73-386h18.1 | -0.088 |
| efnb2b | 0.159 | rtn1b | -0.088 |
| nkx2.1 | 0.156 | tmsb4x | -0.086 |
| eomesa | 0.156 | tmsb2 | -0.086 |
| foxg1a | 0.153 | mab21l2 | -0.085 |
| lix1 | 0.152 | stx1b | -0.084 |
| foxd1 | 0.149 | gng3 | -0.084 |
| il34 | 0.141 | tubb5 | -0.084 |
| wnt7bb | 0.140 | hoxb3a | -0.084 |
| her2 | 0.135 | nova1 | -0.083 |
| hesx1 | 0.135 | meis2a | -0.083 |
| si:ch73-335l21.4 | 0.134 | atp6v0cb | -0.082 |
| XLOC-003690 | 0.134 | snap25a | -0.081 |
| rx3 | 0.132 | pbx1a | -0.081 |
| msi1 | 0.132 | stxbp1a | -0.080 |
| her9 | 0.131 | irx1a | -0.080 |
| lrig1 | 0.131 | ptmaa | -0.080 |
| wnt7ba | 0.131 | elavl4 | -0.078 |
| lhx2b | 0.128 | cd99l2 | -0.078 |
| emx2 | 0.128 | si:dkeyp-75h12.5 | -0.078 |
| pdgfaa | 0.128 | vamp2 | -0.077 |
| sfrp5 | 0.127 | syt2a | -0.077 |
| sox19a | 0.125 | pbx3b | -0.077 |
| foxd2 | 0.125 | tuba1c | -0.076 |
| fzd5 | 0.125 | en2b | -0.075 |
| slc1a3b | 0.125 | irx5a | -0.074 |