| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| fezf2 | 0.225 | mab21l2 | -0.068 |
| foxg1a | 0.215 | elavl4 | -0.065 |
| sox1b | 0.208 | hoxb3a | -0.062 |
| vax1 | 0.185 | meis1b | -0.062 |
| vax2 | 0.182 | mab21l1 | -0.060 |
| fgfrl1a | 0.174 | irx1a | -0.059 |
| fzd5 | 0.151 | pax3a | -0.055 |
| six3a | 0.147 | irx5a | -0.055 |
| eno4 | 0.144 | en2b | -0.055 |
| six3b | 0.141 | pou3f3b | -0.054 |
| cadps2 | 0.140 | slc32a1 | -0.054 |
| six6a | 0.139 | syt2a | -0.053 |
| dmrta2 | 0.138 | meis2a | -0.052 |
| sox5 | 0.131 | irx3a | -0.052 |
| zgc:165461 | 0.129 | si:ch73-386h18.1 | -0.051 |
| rgmd | 0.126 | irx3b | -0.051 |
| lrig1 | 0.125 | rbfox1 | -0.050 |
| six6b | 0.125 | mn1b | -0.050 |
| pdgfaa | 0.123 | cd99l2 | -0.050 |
| sim1a | 0.119 | zfhx3 | -0.050 |
| lix1 | 0.119 | cplx2l | -0.049 |
| emx3 | 0.117 | marcksl1b | -0.048 |
| her2 | 0.116 | pax7a | -0.048 |
| her4.1 | 0.111 | slc6a1b | -0.048 |
| nr5a1b | 0.111 | pou3f1 | -0.047 |
| shha | 0.111 | sncgb | -0.047 |
| bmpr1ba | 0.110 | gpm6ab | -0.047 |
| nr2e1 | 0.106 | raraa | -0.046 |
| XLOC-003692 | 0.106 | si:ch211-57n23.4 | -0.046 |
| XLOC-003690 | 0.101 | si:ch73-30b17.2 | -0.045 |
| zgc:174888 | 0.101 | msi2b | -0.045 |
| her15.1 | 0.099 | stx1b | -0.045 |
| XLOC-003689 | 0.098 | meis2b | -0.044 |
| cyp26c1 | 0.098 | irx1b | -0.044 |
| her4.2 | 0.098 | sb:cb81 | -0.043 |