| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| foxd3 | 0.364 | hmgb2a | -0.095 |
| pax2a | 0.327 | XLOC-003690 | -0.084 |
| slc6a5 | 0.299 | cldn5a | -0.082 |
| slc30a2 | 0.285 | XLOC-003689 | -0.081 |
| hmx3a | 0.276 | msna | -0.080 |
| pax2b | 0.274 | sox3 | -0.080 |
| slc32a1 | 0.258 | gfap | -0.080 |
| pdzrn4 | 0.229 | id1 | -0.079 |
| chrna2a | 0.228 | vim | -0.079 |
| XLOC-005615 | 0.219 | si:ch73-265d7.2 | -0.078 |
| pax5 | 0.212 | stmn1a | -0.077 |
| cbfa2t3 | 0.207 | her12 | -0.076 |
| en2a | 0.207 | gas1b | -0.075 |
| lhx1a | 0.203 | selenoh | -0.074 |
| nxph2a | 0.201 | mdka | -0.073 |
| otpb | 0.196 | her2 | -0.073 |
| en2b | 0.194 | sparc | -0.073 |
| phyhip | 0.193 | fgfr3 | -0.072 |
| si:dkey-175g6.2 | 0.182 | tuba8l4 | -0.072 |
| ube2ql1 | 0.182 | sdc4 | -0.071 |
| adarb2 | 0.181 | fosab | -0.070 |
| nrxn1a | 0.180 | slc1a3a | -0.070 |
| nr5a2 | 0.178 | vamp3 | -0.070 |
| cacna2d3 | 0.178 | si:ch73-281n10.2 | -0.070 |
| npy2r | 0.175 | zgc:56493 | -0.069 |
| pax8 | 0.174 | col4a5 | -0.068 |
| stxbp1a | 0.173 | sox19a | -0.068 |
| lhx5 | 0.168 | col4a6 | -0.067 |
| sncgb | 0.166 | ccnd1 | -0.066 |
| penkb | 0.160 | dut | -0.066 |
| hmx2 | 0.160 | her4.1 | -0.065 |
| znf385c | 0.160 | her15.1 | -0.065 |
| vsnl1a | 0.159 | pcna | -0.065 |
| cplx2l | 0.152 | cd81a | -0.065 |
| nrxn3b | 0.152 | ranbp1 | -0.063 |