| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| tbr1b | 0.292 | id1 | -0.048 |
| eomesa | 0.248 | npm1a | -0.048 |
| emx3 | 0.207 | stmn1a | -0.047 |
| tbr1a | 0.169 | anp32b | -0.047 |
| foxg1a | 0.132 | pcna | -0.046 |
| nms | 0.130 | nop58 | -0.045 |
| CDHR1 (1 of many) | 0.129 | sox3 | -0.045 |
| neurod6b | 0.122 | ranbp1 | -0.044 |
| tbx21 | 0.121 | hmgb2a | -0.044 |
| lhx9 | 0.113 | snu13b | -0.043 |
| nrn1a | 0.108 | nop56 | -0.043 |
| LECT2 (1 of many) | 0.104 | banf1 | -0.043 |
| mpped1 | 0.098 | dkc1 | -0.042 |
| adcyap1b | 0.097 | chaf1a | -0.041 |
| r3hdm1 | 0.097 | ccnd1 | -0.040 |
| lhx2b | 0.095 | meis1b | -0.040 |
| znf296 | 0.095 | fen1 | -0.040 |
| si:dkey-90l8.3 | 0.093 | mcm6 | -0.040 |
| lmo4a | 0.093 | nasp | -0.040 |
| ek1 | 0.091 | nop10 | -0.039 |
| emx2 | 0.087 | fbl | -0.039 |
| etv1 | 0.085 | anp32a | -0.039 |
| bcl11ba | 0.082 | rsl1d1 | -0.039 |
| kctd4 | 0.080 | sox19a | -0.039 |
| slc17a6a | 0.080 | tuba8l | -0.039 |
| celf2 | 0.076 | tuba8l4 | -0.038 |
| efnb2a | 0.075 | mki67 | -0.038 |
| mef2cb | 0.075 | rpa3 | -0.038 |
| CR377211.1 | 0.073 | akap12b | -0.038 |
| myt1a | 0.073 | nhp2 | -0.038 |
| dmrta2 | 0.071 | lig1 | -0.038 |
| mef2aa | 0.070 | selenoh | -0.037 |
| sox4a | 0.070 | vamp3 | -0.037 |
| neurod1 | 0.070 | mcm7 | -0.037 |
| pyya | 0.070 | cdca7b | -0.037 |